1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...ccataagattgggaaattttcttgctttgccaaaactctgctttctataaactgagatcatgttttgggaagcttatactatgttttgtggaatgtgcagATTCATGGTTTCAGGTGGCGTTCGTTTTGACCACCGGTATAAACAGCGCGTATGTGTTGGGATATTCAGGAACAATTATGGTTCCTTTAGGTTGGATTGG
species | Arabidopsis thaliana |
transcript | AT2G39890.2 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TGACGTTGTTGATATCGAAATCCCTGACACTGCTCATCAAATTAGCAGCG ATTCATGGTTTCAGGTGGCGTTCGTTTTGACCACCGGTATAAACAGCGCGTEST: gi|116479428|gb|EG522020.1|EG522020
genomic: TGACGTTGTTGATATCGAAATCCCTGACACTGCTCATCAAATTAGCAGCGgtttgttttt ... gaatgtgcagATTCATGGTTTCAGGTGGCGTTCGTTTTGACCACCGGTATAAACAGCGCGT
EST: TGACGTTGTTGATATCGAAATCCCTGACACTGCTCATCAAATTAGCAGCG ATTCATGGTTTCAGGTGGCGTTCGTTTTGACCACCGGTATAAACAGCGCGT
genomic: TGACGTTGTTGATATCGAAATCCCTGACACTGCTCATCAAATTAGCAGCGgtttgttttt ... gaatgtgcagATTCATGGTTTCAGGTGGCGTTCGTTTTGACCACCGGTATAAACAGCGCGT
tataaactgagatcatgttttgggaagcttatactatgttttgtggaatgtgcagATTCATGGTTTCAGGTGGCGTTCGTTTTGACCACCGGTATAAACAGCGCGTATGTGTTGGGATATTCAGGAACAATTATGGTTCCTTTAGGTTGGATTGG
ttatactatgtttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ccataagattgggaaattttcttgctttgccaaaactctgctttctataaactgagatcatgttttgggaagcttatactatgttttgtggaatgtgcagATTCATGGTTTCAGGTGGCGTTCGTTTTGACCACCGGTATAAACAGCGCGTATGTGTTGGGATATTCAGGAACAATTATGGTTCCTTTAGGTTGGATTGG
- - - - - - - - - - - - - - -ccaaaac
- - - - - - - - - - - - - - - - - - - - - - - - aaactga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgttttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gttttgg