1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtgagtttactgcttactctagtgaagagttttggacgtgtttgtccttaaaatgtttggtttatatatctactatatactagaaattaacaatgagatactagttcacttcgtggcttagttattaaaagtgagaaatgtgaatgatggggtacagATGAAAGAGGTGAAAGGAGCAAAAATAAGGAGAGAAAGAGTTACCAAAGTGAAGAAACACAACCACCATGCAACTTGAGCTCATCCATATACTATGGAGG
species | Arabidopsis thaliana |
transcript | AT2G39855.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GCTGCCAAGTATCAACCTACAAATTTTGAGACCCCAA ATGAAAGAGGTGAAAGGAGCAAAGATAAGGAGAGAAAGAGTTACCAAAGTGEST: gi|116387676|gb|EG430268.1|EG430268
genomic: GCTGCCAAGTATCAACCTACAAATTTTGAGACTCCAAgtgagtttac ... tggggtacagATGAAAGAGGTGAAAGGAGCAAAAATAAGGAGAGAAAGAGTTACCAAAGTG
EST: AAGTCGAAATGGAGCTGCCAAGTATCACCCTACAAATTTTGAGACCCCAA ATGAAAGAGGTGAAAGGAGCAAAGATAAGGAGAGAAAGAGTTACCAAAGTGEST: gi|116387458|gb|EG430050.1|EG430050
genomic: AAGTCGAAATGGAGCTGCCAAGTATCAACCTACAAATTTTGAGACTCCAAgtgagtttac ... tggggtacagATGAAAGAGGTGAAAGGAGCAAAAATAAGGAGAGAAAGAGTTACCAAAGTG
EST: AAGTCGAAATGGAGCTGCCAAGTATCAACCTACAAATTTTGAGACTCCAA ATGAAAGAGGTGAAAGGAGCAAAA-TAAGGAGAGAAAGAGTTACCAAAGTG
genomic: AAGTCGAAATGGAGCTGCCAAGTATCAACCTACAAATTTTGAGACTCCAAgtgagtttac ... tggggtacagATGAAAGAGGTGAAAGGAGCAAAAATAAGGAGAGAAAGAGTTACCAAAGTG
agttcacttcgtggcttagttattaaaagtgagaaatgtgaatgatggggtacagATGAAAGAGGTGAAAGGAGCAAAAATAAGGAGAGAAAGAGTTACCAAAGTGAAGAAACACAACCACCATGCAACTTGAGCTCATCCATATACTATGGAGG
ttagttattaaaagt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagtttactgcttactctagtgaagagttttggacgtgtttgtccttaaaatgtttggtttatatatctactatatactagaaattaacaatgagatactagttcacttcgtggcttagttattaaaagtgagaaatgtgaatgatggggtacagATGAAAGAGGTGAAAGGAGCAAAAATAAGGAGAGAAAGAGTTACCAAAGTGAAGAAACACAACCACCATGCAACTTGAGCTCATCCATATACTATGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG