1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gcaataccaataaacataacctcacataatgttaattatttcttaatgatcaaacaatgatgagattttattgttcaacagTTTTCTGAGCTCATACAAGAACTAGCCATCGTGGAGGCAGAGATTCTCTGTCTAGACCGAAAAATCGAGGAGCTAAAGCTTAAACTGTATTCCGAACAGA
species | Arabidopsis thaliana |
transcript | AT2G39690.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GCTCTATTGTTTCTCTCCCAAGTCTCTCCTCATTGTTTCTTCCACCTCAG TTTTCTGAGCTCATACAAGAACTAGCCATCGTGGAGGCAGAGATTCTCTGTEST: gi|116384064|gb|EG426656.1|EG426656
genomic: GCTCTATTGTTTCTCTCCCAAGTCTCTCCTCATTGTTTCTTCCACCTCAGgcaataccaa ... tgttcaacagTTTTCTGAGCTCATACAAGAACTAGCCATCGTGGAGGCAGAGATTCTCTGT
EST: GCTCTATTGTTTCTCTCCCAAGTCTCTCCTCATTGTTTCTTCCACCTCAG TTTTCTGAGCTCATACAAGAACTAGCCATCGTGGAGGCAGAGATTCTCTGTEST: gi|116384072|gb|EG426664.1|EG426664
genomic: GCTCTATTGTTTCTCTCCCAAGTCTCTCCTCATTGTTTCTTCCACCTCAGgcaataccaa ... tgttcaacagTTTTCTGAGCTCATACAAGAACTAGCCATCGTGGAGGCAGAGATTCTCTGT
EST: GCTCTATTGTTTCTCTCCCAAGTCTCTCCTCATTGTTTCTTCCACCTCAG TTTTCTGAGCTCATACAAGAACTAGCCATCGTGGAGGCAGAGATTCTCTGTEST: gi|116384062|gb|EG426654.1|EG426654
genomic: GCTCTATTGTTTCTCTCCCAAGTCTCTCCTCATTGTTTCTTCCACCTCAGgcaataccaa ... tgttcaacagTTTTCTGAGCTCATACAAGAACTAGCCATCGTGGAGGCAGAGATTCTCTGT
EST: GCTCTATTGTTTCTCTCCCAAGTCTCTCCTCATTGTTTCTTCCACCTCAG TTTTCTGAGCTCATACAAGAACTAGCCATCGTGGAGGCAGAGATTCTCTGTEST: gi|116384067|gb|EG426659.1|EG426659
genomic: GCTCTATTGTTTCTCTCCCAAGTCTCTCCTCATTGTTTCTTCCACCTCAGgcaataccaa ... tgttcaacagTTTTCTGAGCTCATACAAGAACTAGCCATCGTGGAGGCAGAGATTCTCTGT
EST: GCTCTATTGTTTCTCTCCCAAGTCTCTCCTCATTGTTTCTTCCACCTCAG TTTTCTGAGCTCATACAAGAACTAGCCATCGTGGAGGCAGAGATTCTCTGTEST: gi|116384057|gb|EG426649.1|EG426649
genomic: GCTCTATTGTTTCTCTCCCAAGTCTCTCCTCATTGTTTCTTCCACCTCAGgcaataccaa ... tgttcaacagTTTTCTGAGCTCATACAAGAACTAGCCATCGTGGAGGCAGAGATTCTCTGT
EST: GCTCTATTGTTTCTCTCCCAAGTCTCTCCTCATTGTTTCTTCCACCTCAG TTTTCTGAGCTCATACAAGAACTAGCCATCGTGGAGGCAGAGATTCTCTGTEST: gi|116384066|gb|EG426658.1|EG426658
genomic: GCTCTATTGTTTCTCTCCCAAGTCTCTCCTCATTGTTTCTTCCACCTCAGgcaataccaa ... tgttcaacagTTTTCTGAGCTCATACAAGAACTAGCCATCGTGGAGGCAGAGATTCTCTGT
EST: GCTCTATTGTTTCTCTCCCAAGTCTCTCCTCATTGTTTCTTCCACCTCAG TTTTCTGAGCTCATACAAGAACTAGCCATCGTGGAGGCAGAGATTCTCTGTEST: gi|116384055|gb|EG426647.1|EG426647
genomic: GCTCTATTGTTTCTCTCCCAAGTCTCTCCTCATTGTTTCTTCCACCTCAGgcaataccaa ... tgttcaacagTTTTCTGAGCTCATACAAGAACTAGCCATCGTGGAGGCAGAGATTCTCTGT
EST: GCTCTATTGTTTCTCTCCCAAGTCTCTCCTCATTGTTTCTTCCACCTCAG TTTTCTGAGCTCATACAAGAACTAGCCATCGTGGAGGCAGAGATTCTCTGTEST: gi|116384068|gb|EG426660.1|EG426660
genomic: GCTCTATTGTTTCTCTCCCAAGTCTCTCCTCATTGTTTCTTCCACCTCAGgcaataccaa ... tgttcaacagTTTTCTGAGCTCATACAAGAACTAGCCATCGTGGAGGCAGAGATTCTCTGT
EST: GCTCTATTGTTTCTCTCCCAAGTCTCTCCTCATTGTTTCTTCCACCTCAG TTTTCTGAGCTCATACAAGAACTAGCCATCGTGGAGGCAGAGATTCTCTGTEST: gi|116384070|gb|EG426662.1|EG426662
genomic: GCTCTATTGTTTCTCTCCCAAGTCTCTCCTCATTGTTTCTTCCACCTCAGgcaataccaa ... tgttcaacagTTTTCTGAGCTCATACAAGAACTAGCCATCGTGGAGGCAGAGATTCTCTGT
EST: GCTCTATTGTTTCTCTCCCAAGTCTCTCCTCATTGTTTCTTCCACCTCAG TTTTCTGAGCTCATACAAGAACTAGCCATCGTGGAGGCAGAGATTCTCTGT
genomic: GCTCTATTGTTTCTCTCCCAAGTCTCTCCTCATTGTTTCTTCCACCTCAGgcaataccaa ... tgttcaacagTTTTCTGAGCTCATACAAGAACTAGCCATCGTGGAGGCAGAGATTCTCTGT
taatgttaattatttcttaatgatcaaacaatgatgagattttattgttcaacagTTTTCTGAGCTCATACAAGAACTAGCCATCGTGGAGGCAGAGATTCTCTGTCTAGACCGAAAAATCGAGGAGCTAAAGCTTAAACTGTATTCCGAACAGA
tcttaat putative branch site (score: 3)
ttttatt putative PPT
ttaattatttcttaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gcaataccaataaacataacctcacataatgttaattatttcttaatgatcaaacaatgatgagattttattgttcaacagTTTTCTGAGCTCATACAAGAACTAGCCATCGTGGAGGCAGAGATTCTCTGTCTAGACCGAAAAATCGAGGAGCTAAAGCTTAAACTGTATTCCGAACAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT