1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtttgatttttttattttctgggttgctcttgatttgttactcctagattgaacttgttgacatttctctgatttgttatttcataaagctatcatctttctgcagATTACTTCATTTCTGGTTATTCTCGAAGAGTAGAGGTCTCAAAAGAAATGGAGTCTAAGGAAATTAGATCCTCCTCTGTCTTTGAGAGATCGATGCGTTT
species | Arabidopsis thaliana |
transcript | AT2G39435.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GTTCTTTTTTCCCAGATTTGGATCGGCGAATCTTTTGATGATAAAG ATTACTTCATTTCTGGTTATTCTCGAAGAGTAGAGGTCTCAAAAGAAATGGEST: gi|124821327|gb|EH906193.1|EH906193
genomic: GTTCTTTTTTCCCAGATTTGGATCGGCGAATCTTTTGATGATAAAGgtttgatttt ... ctttctgcagATTACTTCATTTCTGGTTATTCTCGAAGAGTAGAGGTCTCAAAAGAAATGG
EST: GAATCTTTTGATGATAAAG ATTACTTCATTTCTGGTTATTCTCGAAGAGTAGAGGTCTCAAAAAGAAATG
genomic: GAATCTTTTGATGATAAAGgtttgatttt ... ctttctgcagATTACTTCATTTCTGGTTATTCTCGAAGAGTAGAGGTCTCAAAA-GAAATG
aacttgttgacatttctctgatttgttatttcataaagctatcatctttctgcagATTACTTCATTTCTGGTTATTCTCGAAGAGTAGAGGTCTCAAAAGAAATGGAGTCTAAGGAAATTAGATCCTCCTCTGTCTTTGAGAGATCGATGCGTTT
tcatctttct CT-rich tract
atttgttatttcataa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttgatttttttattttctgggttgctcttgatttgttactcctagattgaacttgttgacatttctctgatttgttatttcataaagctatcatctttctgcagATTACTTCATTTCTGGTTATTCTCGAAGAGTAGAGGTCTCAAAAGAAATGGAGTCTAAGGAAATTAGATCCTCCTCTGTCTTTGAGAGATCGATGCGTTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC