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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtattatttgatttcattcgtttttagcttcacaagagtttcaatttggcatttctctagatggtctatccatttgcatacatttctcttcatgtctagcagttgaactatactaatttttcgactgtcttgaccacttgcagGTCTCTTGGTGGTGCTGCTGCTGCTGAGAAGAAGATGTAGACATCTTATTAGGCTTCTGTGTTATGGCATATTTCTTTCTATTGGAAATCAAGTTTTGGC

Basic information

species Arabidopsis thaliana
transcript AT2G37600.2
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86079643|gb|DR375400.1|DR375400
EST:     AGAGCTAAGAGGAAGAGAGAGGAGATGTCTAGTGTTCTCCGCAGGATGAG                         GTCTCTTGGTGGTGCTGCTGCTGCTGAGAAGAAGATGTAGACATCTTATTA
genomic: AGAGCTAAGAGGAAGAGAGAGGAGATGTCTAGTGTTCTCCGCAAGATGAGgtattatttg ... ccacttgcagGTCTCTTGGTGGTGCTGCTGCTGCTGAGAAGAAGATGTAGACATCTTATTA
EST: gi|164182990|gb|EL988562.1|EL988562
EST:     GTCTGGTGTTCTCCGCAAGATGAG                         GTCTCTTGGTGGTGCTGCTGCTGCTGAGAAGAAGATGTAGACATCTTATTA
genomic: GTCTAGTGTTCTCCGCAAGATGAGgtattatttg ... ccacttgcagGTCTCTTGGTGGTGCTGCTGCTGCTGAGAAGAAGATGTAGACATCTTATTA
EST: gi|86024752|gb|DR320505.1|DR320505
EST:     AGAGCTAAGAGGAAGAGAGAGGAGATGTCTAGTGTTCTCCGCAAGATGAG                         GTCTCTTGGTGGTGCTGCTGCTGCTGAGAAGAAGATGTAGACATCTTATTA
genomic: AGAGCTAAGAGGAAGAGAGAGGAGATGTCTAGTGTTCTCCGCAAGATGAGgtattatttg ... ccacttgcagGTCTCTTGGTGGTGCTGCTGCTGCTGAGAAGAAGATGTAGACATCTTATTA
EST: gi|164236085|gb|ES158094.1|ES158094
EST:     GATGTCTGGTGTTCTCCGCAAGATGAG                         GTCTCTTGGTGGTGCTGCTGCTGC
genomic: GATGTCTAGTGTTCTCCGCAAGATGAGgtattatttg ... ccacttgcagGTCTCTTGGTGGTGCTGCTGCTGC
EST: gi|86024747|gb|DR320500.1|DR320500
EST:     AGAGCTAAGAGGAAGAGAGAGGAGATGTCTAGTGTTCTCCGCAAGATGAG                         GTCTCTTGGTGGTGCTGCTGCTGCTGAGAAGAAGATGTAGACATCTTATTA
genomic: AGAGCTAAGAGGAAGAGAGAGGAGATGTCTAGTGTTCTCCGCAAGATGAGgtattatttg ... ccacttgcagGTCTCTTGGTGGTGCTGCTGCTGCTGAGAAGAAGATGTAGACATCTTATTA
EST: gi|164101436|gb|ES110807.1|ES110807
EST:     AGAGCTAAGAGGAAGAGAGAGGAGATGTCTGGTGTTCTCCGCAAGATGAG                         GTCTCTTGGTGGTGCTGCTGCTGC
genomic: AGAGCTAAGAGGAAGAGAGAGGAGATGTCTAGTGTTCTCCGCAAGATGAGgtattatttg ... ccacttgcagGTCTCTTGGTGGTGCTGCTGCTGC
EST: gi|86035294|gb|DR331047.1|DR331047
EST:     AGAGCTAAGAGGAAGAGAGAGGAGATGTCTAGTGTTCTCCGCA-GATGAG                         GTCTCTTGGTGGTGCTGCTGCTGCTGAGAAGAAGATGTAGACATCTTATTA
genomic: AGAGCTAAGAGGAAGAGAGAGGAGATGTCTAGTGTTCTCCGCAAGATGAGgtattatttg ... ccacttgcagGTCTCTTGGTGGTGCTGCTGCTGCTGAGAAGAAGATGTAGACATCTTATTA
EST: gi|86024757|gb|DR320510.1|DR320510
EST:     AGAGCTAAGAGGAAGAGAGAGGAGATGTCTAGTGTTCTCCGCAAGATGAG                         GTCTCTTGGTGGTGCTGCTGCTGCTGAGAAGAAGATGTAGACATCTTATTA
genomic: AGAGCTAAGAGGAAGAGAGAGGAGATGTCTAGTGTTCTCCGCAAGATGAGgtattatttg ... ccacttgcagGTCTCTTGGTGGTGCTGCTGCTGCTGAGAAGAAGATGTAGACATCTTATTA
EST: gi|86024754|gb|DR320507.1|DR320507
EST:     AGAGCTAAGAGGAAGAGAGAGGAGATGTCTAGTGTTCTCCGCAAGATGAG                         GTCTCTTGGTGGTGCTGCTGCTGCTGAGAAGAAGATGTAGACATCTTATTA
genomic: AGAGCTAAGAGGAAGAGAGAGGAGATGTCTAGTGTTCTCCGCAAGATGAGgtattatttg ... ccacttgcagGTCTCTTGGTGGTGCTGCTGCTGCTGAGAAGAAGATGTAGACATCTTATTA
EST: gi|86024749|gb|DR320502.1|DR320502
EST:     AGAGCTAAGAGGAAGAGAGAGGAGATGTCTAGTGTTCTCCGCAAGATGAG                         GTCTCTTGGTGGTGCTGCTGCTGCTGAGAAGAAGATGTAGACATCTTATTA
genomic: AGAGCTAAGAGGAAGAGAGAGGAGATGTCTAGTGTTCTCCGCAAGATGAGgtattatttg ... ccacttgcagGTCTCTTGGTGGTGCTGCTGCTGCTGAGAAGAAGATGTAGACATCTTATTA
EST: gi|86024744|gb|DR320497.1|DR320497
EST:     AGAGCTAAGAGGAAGAGAGAGGAGATGTCTAGTGTTCTCCGCAAGATGAG                         GTCTCTTGGTGGTGCTGCTGCTGCTGAGAAGAAGATGTAGACATCTTATTA
genomic: AGAGCTAAGAGGAAGAGAGAGGAGATGTCTAGTGTTCTCCGCAAGATGAGgtattatttg ... ccacttgcagGTCTCTTGGTGGTGCTGCTGCTGCTGAGAAGAAGATGTAGACATCTTATTA
EST: gi|86024742|gb|DR320495.1|DR320495
EST:     AGAGCTAAGAGGAAGAGAGAGGAGATGTCTAGTGTTCTCCGCAAGATGAG                         GTCTCTTGGTGGTGCTGCTGCTGCTGAGAAGAAGATGTAGACATCTTATTA
genomic: AGAGCTAAGAGGAAGAGAGAGGAGATGTCTAGTGTTCTCCGCAAGATGAGgtattatttg ... ccacttgcagGTCTCTTGGTGGTGCTGCTGCTGCTGAGAAGAAGATGTAGACATCTTATTA
EST: gi|86024750|gb|DR320503.1|DR320503
EST:     AGAGCTAAGAGGAAGAGAGAGGAGATGTCTAGTGTTCTCCGCAAGATGAG                         GTCTCTTGGTGGTGCTGCTGCTGCTGAGAAGAAGATGTAGACATCTTATTA
genomic: AGAGCTAAGAGGAAGAGAGAGGAGATGTCTAGTGTTCTCCGCAAGATGAGgtattatttg ... ccacttgcagGTCTCTTGGTGGTGCTGCTGCTGCTGAGAAGAAGATGTAGACATCTTATTA
EST: gi|86024740|gb|DR320493.1|DR320493
EST:     AGAGCTAAGAGGAAGAGAGAGGAGATGTCTAGTGTTCTCCGCAAGATGAG                         GTCTCTTGGTGGTGCTGCTGCTGCTGAGAAGAAGATGTAGACATCTTATTA
genomic: AGAGCTAAGAGGAAGAGAGAGGAGATGTCTAGTGTTCTCCGCAAGATGAGgtattatttg ... ccacttgcagGTCTCTTGGTGGTGCTGCTGCTGCTGAGAAGAAGATGTAGACATCTTATTA
EST: gi|164091421|gb|ES209891.1|ES209891
EST:     GGAGATGTCTGGTGTTCTCCGCAAGATGAG                         GTCTCTTGGTGGTGCTGCTGCTGCTGAGAAGAAGATGTAGACATCTTATTA
genomic: GGAGATGTCTAGTGTTCTCCGCAAGATGAGgtattatttg ... ccacttgcagGTCTCTTGGTGGTGCTGCTGCTGCTGAGAAGAAGATGTAGACATCTTATTA
EST: gi|86024741|gb|DR320494.1|DR320494
EST:     AGAGCTAAGAGGAAGAGAGAGGAGATGTCTAGTGTTCTCCGCAAGATGAG                         GTCTCTTGGTGGTGCTGCTGCTGCTGAGAAGAAGATGTAGACATCTTATTA
genomic: AGAGCTAAGAGGAAGAGAGAGGAGATGTCTAGTGTTCTCCGCAAGATGAGgtattatttg ... ccacttgcagGTCTCTTGGTGGTGCTGCTGCTGCTGAGAAGAAGATGTAGACATCTTATTA
EST: gi|164189571|gb|ES008942.1|ES008942
EST:     CGCAAGATGAG                         GTCTCTTGGTGGTGCTGCTGCTGCTGAGAAGAAGATGTAGACATCTTATTA
genomic: CGCAAGATGAGgtattatttg ... ccacttgcagGTCTCTTGGTGGTGCTGCTGCTGCTGAGAAGAAGATGTAGACATCTTATTA
EST: gi|124727398|gb|EH818800.1|EH818800
EST:     GATGTCTAGTGTTCTCCGCAAGATGAG                         GTCTCTTGGTGGTGCTGCTGCTGCTGAGAAGAAGATGTAGACATCTTATTA
genomic: GATGTCTAGTGTTCTCCGCAAGATGAGgtattatttg ... ccacttgcagGTCTCTTGGTGGTGCTGCTGCTGCTGAGAAGAAGATGTAGACATCTTATTA
EST: gi|86024753|gb|DR320506.1|DR320506
EST:     AGAGCTAAGAGGAAGAGAGAGGAGATGTCTAGTGTTCTCCGCAAGATGAG                         GTCTCTTGGTGGTGCTGCTGCTGCTGAGAAGAAGATGTAGACATCTTATTA
genomic: AGAGCTAAGAGGAAGAGAGAGGAGATGTCTAGTGTTCTCCGCAAGATGAGgtattatttg ... ccacttgcagGTCTCTTGGTGGTGCTGCTGCTGCTGAGAAGAAGATGTAGACATCTTATTA
EST: gi|86024748|gb|DR320501.1|DR320501
EST:     AGAGCTAAGAGGAAGAGAGAGGAGATGTCTAGT-TTCTCCGCAAGATGAG                         GTCTCTTGGTGGTGCTGCTGCTGCTGAGAAGAAGATGTAGACATCTTATTA
genomic: AGAGCTAAGAGGAAGAGAGAGGAGATGTCTAGTGTTCTCCGCAAGATGAGgtattatttg ... ccacttgcagGTCTCTTGGTGGTGCTGCTGCTGCTGAGAAGAAGATGTAGACATCTTATTA
EST: gi|86035293|gb|DR331046.1|DR331046
EST:     AGAGCTAAGAGGAAGAGAGAGGAGATGTCTAGTGTTCTCCGCA-GATGAG                         GTCTCTTGGTGGTGCTGCTGCTGCTGAGAAGAAGATGTAGACATCTTATTA
genomic: AGAGCTAAGAGGAAGAGAGAGGAGATGTCTAGTGTTCTCCGCAAGATGAGgtattatttg ... ccacttgcagGTCTCTTGGTGGTGCTGCTGCTGCTGAGAAGAAGATGTAGACATCTTATTA
EST: gi|86024755|gb|DR320508.1|DR320508
EST:     AGAGCTAAGAGGAAGAGACAGGAGATGTCTAGTGTTCTCCGCAAGATGAG                         GTCTCTTGGTGGTGCTGCTGCTGCTGAGAAGAAGATGTAGACATCTTATTA
genomic: AGAGCTAAGAGGAAGAGAGAGGAGATGTCTAGTGTTCTCCGCAAGATGAGgtattatttg ... ccacttgcagGTCTCTTGGTGGTGCTGCTGCTGCTGAGAAGAAGATGTAGACATCTTATTA
EST: gi|86024751|gb|DR320504.1|DR320504
EST:     AGAGCTAAGAGGAAGAGAGAGGAGATGTCTAGTGTTCTCCGCAAGATGAG                         GTCTCTTGGTGGTGCTGCTGCTGCTGAGAAGAAGATGTAGACATCTTATTA
genomic: AGAGCTAAGAGGAAGAGAGAGGAGATGTCTAGTGTTCTCCGCAAGATGAGgtattatttg ... ccacttgcagGTCTCTTGGTGGTGCTGCTGCTGCTGAGAAGAAGATGTAGACATCTTATTA
EST: gi|86024756|gb|DR320509.1|DR320509
EST:     AGAGCTAAGAGGAAGAGAGAGGAGATGTCTAGTGTTCTCCGCAAGATGAG                         GTCTCTTGGTGGTGCTGCTGCTGCTGAGAAGAAGATGTAGACATCTTATTA
genomic: AGAGCTAAGAGGAAGAGAGAGGAGATGTCTAGTGTTCTCCGCAAGATGAGgtattatttg ... ccacttgcagGTCTCTTGGTGGTGCTGCTGCTGCTGAGAAGAAGATGTAGACATCTTATTA
EST: gi|86024746|gb|DR320499.1|DR320499
EST:     GAGCTAAGAGGAAGAGAGAGGGAGATGTCTAGTGTTCTCCGCAAGATGAG                         GTCTCTTGGTGGTGCTGCTGCTGCTGAGAAGAAGATGTAGACATCTTATTA
genomic: GAGCTAAGAGGAAGAGAGAGG-AGATGTCTAGTGTTCTCCGCAAGATGAGgtattatttg ... ccacttgcagGTCTCTTGGTGGTGCTGCTGCTGCTGAGAAGAAGATGTAGACATCTTATTA
EST: gi|86024759|gb|DR320512.1|DR320512
EST:     AGAGCTAAGAGGAAGAGAGAGGAGATGTCTAGTGTTCTCCGCAAGATGAG                         GTCTCTTGGTGGTGCTGCTGCTGCTGAGAAGAAGATGTAGACATCTTATTA
genomic: AGAGCTAAGAGGAAGAGAGAGGAGATGTCTAGTGTTCTCCGCAAGATGAGgtattatttg ... ccacttgcagGTCTCTTGGTGGTGCTGCTGCTGCTGAGAAGAAGATGTAGACATCTTATTA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttcatgtctagcagttgaactatactaatttttcgactgtcttgaccacttgcagGTCTCTTGGTGGTGCTGCTGCTGCTGAGAAGAAGATGTAGACATCTTATTAGGCTTCTGTGTTATGGCATATTTCTTTCTATTGGAAATCAAGTTTTGGC
                 aactatactaattttt  TA-rich tract