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gttttgaattgcatataaaattagaaatcttttcgagaagttgctatcaaagtctgaaaatttgagtgttttgtttagATAGCTGGTGGAGTTACAGCTGCTAAAGGGTTTAAAGCTGCTGGTATGTATGCTGGATTACGAGCTGCAGGGAAGAAACCTGATCTCGCTCTTGTAACAT
species | Arabidopsis thaliana |
transcript | AT2G37500.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CTACCTCAAGGGTCATGGAAACAG ATAGCTGGTGGAGTTACAGCTGCTAAAGGGTTTAAAGCTGCTGGTATGTATEST: gi|152035364|gb|BP851590.2|BP851590
genomic: CTACCTCAAGGGTCATGGAAACAGgttttgaatt ... ttttgtttagATAGCTGGTGGAGTTACAGCTGCTAAAGGGTTTAAAGCTGCTGGTATGTAT
EST: GTAACATACCAGCGGCTCCGATTTCTCTACCTCAAGGGTCATGGAAACAG ATAGCTGGTGGAGTTACAGCTGCTAAAGGGTTTAAAGCTGCTGGTATGTAT
genomic: GTAACATACCAGCGGCTCCGATTTCTCTACCTCAAGGGTCATGGAAACAGgttttgaatt ... ttttgtttagATAGCTGGTGGAGTTACAGCTGCTAAAGGGTTTAAAGCTGCTGGTATGTAT
gaaatcttttcgagaagttgctatcaaagtctgaaaatttgagtgttttgtttagATAGCTGGTGGAGTTACAGCTGCTAAAGGGTTTAAAGCTGCTGGTATGTATGCTGGATTACGAGCTGCAGGGAAGAAACCTGATCTCGCTCTTGTAACAT
ttttgttt CT-rich tract
tgaaaattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttttgaattgcatataaaattagaaatcttttcgagaagttgctatcaaagtctgaaaatttgagtgttttgtttagATAGCTGGTGGAGTTACAGCTGCTAAAGGGTTTAAAGCTGCTGGTATGTATGCTGGATTACGAGCTGCAGGGAAGAAACCTGATCTCGCTCTTGTAACAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA