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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtttgaaagctatgtgtagttagattttctttatttgcaatggttttttgttaaaaggtttttgtaatgtagGTACCATGGAGACTGGAGAAGTGAAACACAGGCAGTGGTCTCCCAGCTTGCTTTTATGCACTGGCTAGAAACTGGAACTCTTCTCGTGCATACCGAAGCT

Basic information

species Arabidopsis thaliana
transcript AT2G37020.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116444079|gb|EG486671.1|EG486671
EST:     TATGGTCGGCTTGCTGAAATTCTTGAGGAGTGTCCTGGACAATACTATAG                         GTACCATGGAGACTGGAGAAGTGAAACACAGGCAGTGGTCTCCCAGCTTGC
genomic: TATGGTCGGCTTGCTGAAATTCTTGAGGAGTGTCCTGGACAATACTATAGgtaagtttga ... tgtaatgtagGTACCATGGAGACTGGAGAAGTGAAACACAGGCAGTGGTCTCCCAGCTTGC
EST: gi|86086716|gb|DR382475.1|DR382475
EST:     TATGGTCGGCTTGCTGAAATTCTTGAGGAATGTCCTGGACAGTACTATAG                         GTNCCATGGAGACTGGAGAAGTGAAACACAGGCAGTGGTCTCCCAGCTTGC
genomic: TATGGTCGGCTTGCTGAAATTCTTGAGGAGTGTCCTGGACAATACTATAGgtaagtttga ... tgtaatgtagGTACCATGGAGACTGGAGAAGTGAAACACAGGCAGTGGTCTCCCAGCTTGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agttagattttctttatttgcaatggttttttgttaaaaggtttttgtaatgtagGTACCATGGAGACTGGAGAAGTGAAACACAGGCAGTGGTCTCCCAGCTTGCTTTTATGCACTGGCTAGAAACTGGAACTCTTCTCGTGCATACCGAAGCT
                                         tttttgt  CT-rich tract
      attttctttattt  TA-rich tract