1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
gtatgttgcattgatttaaaagttgtgcttgtatgcttgttttgttagcttagttgattttttttaatggaaatggcgatgttgcagCTAAGAAGCCGACTAGGCAATGGGCTGCTTGGACACATCAAGAAGAGGAAAGTTTCTTCACTGCTCTTCGTCAAGTTGGAAAG
species | Arabidopsis thaliana |
transcript | AT2G36960.3 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CAACCCTAATTTACTCTCTTCTGCTTCTATCAGTATTACTCAGTTTCCTG CTAAGAAGCCGACTAGGCAATGGGCTGCTTGGACACATCAAGAAGAGGAAAEST: gi|86069766|gb|DR365523.1|DR365523
genomic: CAACCCTAATTTACTCTCTTCTGCTTCTATCAGTATTACTCAGTTTCCTGgtatgttgca ... gatgttgcagCTAAGAAGCCGACTAGGCAATGGGCTGCTTGGACACATCAAGAAGAGGAAA
EST: CAACCCTAATTTACTCTCTTCTGCTTCTATCAGTATTACTCAGTTTCCTG CTAAGAAGCCGACTAGGCAATGGGCTGCTTGGACACATCAAGAAGAGGAAAEST: gi|86069770|gb|DR365527.1|DR365527
genomic: CAACCCTAATTTACTCTCTTCTGCTTCTATCAGTATTACTCAGTTTCCTGgtatgttgca ... gatgttgcagCTAAGAAGCCGACTAGGCAATGGGCTGCTTGGACACATCAAGAAGAGGAAA
EST: CAACCCTAATTTACTCTCTTCTGCTTCTATCAGTATTACTCAGTTTCCTG CTAAGAAGCCGACTAGGCAATGGGCTGATTGGACACATCAAGAAGAGGAAAEST: gi|86069767|gb|DR365524.1|DR365524
genomic: CAACCCTAATTTACTCTCTTCTGCTTCTATCAGTATTACTCAGTTTCCTGgtatgttgca ... gatgttgcagCTAAGAAGCCGACTAGGCAATGGGCTGCTTGGACACATCAAGAAGAGGAAA
EST: CAACCCTAATTTACTCTCTTCTGCTTCTATCAGTATTACTCAGTTTCCTG CTAAGAAGCCGACTAGGCAATGGGCTGCTTGGACACATCAAGAAGAGGAAAEST: gi|86069769|gb|DR365526.1|DR365526
genomic: CAACCCTAATTTACTCTCTTCTGCTTCTATCAGTATTACTCAGTTTCCTGgtatgttgca ... gatgttgcagCTAAGAAGCCGACTAGGCAATGGGCTGCTTGGACACATCAAGAAGAGGAAA
EST: CAACCCTAATTTACTCTCTTCTGCTTCTATCAGTATTACTCAGTTTCCTG CTAAGAAGCCGACTAGGCAATGGGCTGCTTGGACACATCAAGAAGAGGAAAEST: gi|86069768|gb|DR365525.1|DR365525
genomic: CAACCCTAATTTACTCTCTTCTGCTTCTATCAGTATTACTCAGTTTCCTGgtatgttgca ... gatgttgcagCTAAGAAGCCGACTAGGCAATGGGCTGCTTGGACACATCAAGAAGAGGAAA
EST: CAACCCTAATTTACTCTCTTCTGCTTCTATCAGTATTACTCAGTTTCCTG CTAAGAAGCCGACTAGGCAATGGGCTGCTTGGACACATCAAGAAGAGGAAAEST: gi|86069771|gb|DR365528.1|DR365528
genomic: CAACCCTAATTTACTCTCTTCTGCTTCTATCAGTATTACTCAGTTTCCTGgtatgttgca ... gatgttgcagCTAAGAAGCCGACTAGGCAATGGGCTGCTTGGACACATCAAGAAGAGGAAA
EST: CAACCCTAATTTACTCTCTTCTGCTTCTATCAGTATTACTCAGTTTCCTG CTAAGAAGCCGACTAGGCAATGGGCTGCTTGGACACATCAAGAAGAGGAAA
genomic: CAACCCTAATTTACTCTCTTCTGCTTCTATCAGTATTACTCAGTTTCCTGgtatgttgca ... gatgttgcagCTAAGAAGCCGACTAGGCAATGGGCTGCTTGGACACATCAAGAAGAGGAAA
atgcttgttttgttagcttagttgattttttttaatggaaatggcgatgttgcagCTAAGAAGCCGACTAGGCAATGGGCTGCTTGGACACATCAAGAAGAGGAAAGTTTCTTCACTGCTCTTCGTCAAGTTGGAAAG
ttttaat putative branch site (score: 3)
ttgattttttttaatg TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgttgcattgatttaaaagttgtgcttgtatgcttgttttgttagcttagttgattttttttaatggaaatggcgatgttgcagCTAAGAAGCCGACTAGGCAATGGGCTGCTTGGACACATCAAGAAGAGGAAAGTTTCTTCACTGCTCTTCGTCAAGTTGGAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA