1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gttaaatcattcttgactcttggtttgatgatggttgtgatgtcataataatgtttttgattggtttctgttgaatggtattggagaatagGACACTGAAGATTGAGGTTGAGGAGCTGAAAGAGTTAGATGAAGAGAGGGAGAAGTATTACAAGGTGAAATGTTCAGAGATGAATGAGTTTATGCAAAAT
species | Arabidopsis thaliana |
transcript | AT2G34580.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: AACATCGATGATCTCGACTCCAAATACCACAGCTATATACAACAATTGAG GACACTGAAGATTGAGGTTGAGGAGCTGAAAGAGTTAGATGAAGAGAGGGAEST: gi|116418833|gb|EG461425.1|EG461425
genomic: AACATCGATGATCTCGACTCCAAATACCACAGCTATATACAACAATTGAGgttaaatcat ... tggagaatagGACACTGAAGATTGAGGTTGAGGAGCTGAAAGAGTTAGATGAAGAGAGGGA
EST: AACATCGATGATCTCGACTCCAAATACCACAGCTATATACAACAATTGAG GACACTGAAGATTGAGGTTGAGGAGCTGAAAGAGTTAGATGAAGAGAGGGAEST: gi|116418820|gb|EG461412.1|EG461412
genomic: AACATCGATGATCTCGACTCCAAATACCACAGCTATATACAACAATTGAGgttaaatcat ... tggagaatagGACACTGAAGATTGAGGTTGAGGAGCTGAAAGAGTTAGATGAAGAGAGGGA
EST: AACATCGATGATCTCGACTCCAAATACCACAGCTATATACAACAATTGAG GACACTGAAGATTGAGGTTGAGGAGCTGAAGGAGTTAGATGAAGAGAGGGAEST: gi|116418831|gb|EG461423.1|EG461423
genomic: AACATCGATGATCTCGACTCCAAATACCACAGCTATATACAACAATTGAGgttaaatcat ... tggagaatagGACACTGAAGATTGAGGTTGAGGAGCTGAAAGAGTTAGATGAAGAGAGGGA
EST: AACATCGATGATCTCGACTCCAAATACCACAGCTATATACAACAATTGAG GACACTGAAGATTGAGGTTGAGGAGCTGAAAGAGTTAGATGAAGAGAGGGAEST: gi|116418822|gb|EG461414.1|EG461414
genomic: AACATCGATGATCTCGACTCCAAATACCACAGCTATATACAACAATTGAGgttaaatcat ... tggagaatagGACACTGAAGATTGAGGTTGAGGAGCTGAAAGAGTTAGATGAAGAGAGGGA
EST: AACATCGATGATCTCGACTCCAAATACCACAGCTATATACAACAATTGAG GACACTGAAGATTGAGGTTGAGGAGCTGAAAGAGTTAGATGAAGAGAGGGAEST: gi|116418816|gb|EG461408.1|EG461408
genomic: AACATCGATGATCTCGACTCCAAATACCACAGCTATATACAACAATTGAGgttaaatcat ... tggagaatagGACACTGAAGATTGAGGTTGAGGAGCTGAAAGAGTTAGATGAAGAGAGGGA
EST: AACATCGATGATCTCGACTCCAAATACCACAGCTATATACAACAATTGAG GACACTGAAGATTGAGGTTGAGGAGTTGAAAGAGTTAGATGAAGAGAGGGAEST: gi|116418811|gb|EG461403.1|EG461403
genomic: AACATCGATGATCTCGACTCCAAATACCACAGCTATATACAACAATTGAGgttaaatcat ... tggagaatagGACACTGAAGATTGAGGTTGAGGAGCTGAAAGAGTTAGATGAAGAGAGGGA
EST: AACATCGATGATCTCGACTCCAAATACCACAGCTATATACAACAATTGAG GACACTGAAGATTGAGGTTGAGGAGCTGAAAGAGTTAGATGAAGAGAGGGA
genomic: AACATCGATGATCTCGACTCCAAATACCACAGCTATATACAACAATTGAGgttaaatcat ... tggagaatagGACACTGAAGATTGAGGTTGAGGAGCTGAAAGAGTTAGATGAAGAGAGGGA
gtgatgtcataataatgtttttgattggtttctgttgaatggtattggagaatagGACACTGAAGATTGAGGTTGAGGAGCTGAAAGAGTTAGATGAAGAGAGGGAGAAGTATTACAAGGTGAAATGTTCAGAGATGAATGAGTTTATGCAAAAT
ttttgat putative branch site (score: 4)
ataataatgtttttga TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttaaatcattcttgactcttggtttgatgatggttgtgatgtcataataatgtttttgattggtttctgttgaatggtattggagaatagGACACTGAAGATTGAGGTTGAGGAGCTGAAAGAGTTAGATGAAGAGAGGGAGAAGTATTACAAGGTGAAATGTTCAGAGATGAATGAGTTTATGCAAAAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG