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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaggttttgttttttatatctttaccagtaaattgaagttcttatggtttcaagaaattttacagggttttcaattattggaatgttgtttctgttggctctttatctgaatacaatcttactaagaggttacggatcttggactttgtagGAACTTGAGCAAAAGCCATCCTCTTTTGTTGTATATATGAATTAAATGGACCCTAAAAGTTGTGAGAATTCGAGTGATGTTAAGGGTCAGACCAGTGACT

Basic information

species Arabidopsis thaliana
transcript AT2G34200.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116461694|gb|EG504286.1|EG504286
EST:     TCGTAGCTTTTTCTTGCTAGTGGGTCTTTTGAGGTGGATCTGGATTCTGG                         GAACTTGAGCAAAAGCCATCCTCTTTTGTTGTATATATGAATTAAATGGAC
genomic: TCGTAGCTTTTTCTTGCTAGTGGGTCTTTTGAGGTGGATCTGGATTCTGGgtaaggtttt ... gactttgtagGAACTTGAGCAAAAGCCATCCTCTTTTGTTGTATATATGAATTAAATGGAC
EST: gi|116391853|gb|EG434445.1|EG434445
EST:     TCGTAGCTTTTTCTTGCTAGTGGGTCTTTTGAGGTGGATCTGGATTCTGG                         GAACTTGAGCAAAAGCCATCCTCTTTTGTTGTATATATGAATTAAATGGAC
genomic: TCGTAGCTTTTTCTTGCTAGTGGGTCTTTTGAGGTGGATCTGGATTCTGGgtaaggtttt ... gactttgtagGAACTTGAGCAAAAGCCATCCTCTTTTGTTGTATATATGAATTAAATGGAC
EST: gi|116391852|gb|EG434444.1|EG434444
EST:     TCGTAGCNNNNNNNNGCTAGTGGGTCTTTTGAGGTGGATCTGGATTCTGG                         GAACTTGAGCAAAAGCCATCCTCTTTTGTTGTATATATGAATTAAATGGAC
genomic: TCGTAGCTTTTTCTTGCTAGTGGGTCTTTTGAGGTGGATCTGGATTCTGGgtaaggtttt ... gactttgtagGAACTTGAGCAAAAGCCATCCTCTTTTGTTGTATATATGAATTAAATGGAC
EST: gi|116391850|gb|EG434442.1|EG434442
EST:     TCGTAGCNNNNNNNNGCTAGTGGGTCTTTTGAGGTGGATCTGGATTCTGG                         GAACTTGAGCAAAAGCCATCCTCTTTTGTTGTATATATGAATTAAATGGAC
genomic: TCGTAGCTTTTTCTTGCTAGTGGGTCTTTTGAGGTGGATCTGGATTCTGGgtaaggtttt ... gactttgtagGAACTTGAGCAAAAGCCATCCTCTTTTGTTGTATATATGAATTAAATGGAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggctctttatctgaatacaatcttactaagaggttacggatcttggactttgtagGAACTTGAGCAAAAGCCATCCTCTTTTGTTGTATATATGAATTAAATGGACCCTAAAAGTTGTGAGAATTCGAGTGATGTTAAGGGTCAGACCAGTGACT
                   atcttac  putative branch site (score: 3)
             aatacaat  TA-rich tract