1 5' 3' | 2 5' 3' | 3 5' 3' |
gtaataacatcattaagccttgttcttgtttgattataatcctttgatcttttttttctttttctaattgatgttgcaaattgcagCCGATACTTTGTCATTCCATTGTGGAGAGGAAATGGTTACATAACAATGTTTGCTCAAG
species | Arabidopsis thaliana |
transcript | AT2G34050.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: ACGATGAAAGCTCAGCTTTATCGATTGTTGGAGCAACGAGCCTCCGAGTG CCGATACTTTGTCATTCCATTGTGGAGAGGAAATGGTTACATAACAATGTTEST: gi|86077967|gb|DR373724.1|DR373724
genomic: ACGATGAAAGCTCAGCTTTATCGATTGTTGGAGCAACGAGCCTCCGAGTGgtaataacat ... caaattgcagCCGATACTTTGTCATTCCATTGTGGAGAGGAAATGGTTACATAACAATGTT
EST: ACGATGAAAGCTCAGCTTTATCGATTGTTGGAGCAACGAGCCTCCGAGTG CCGATACTTTGTCATTCCATCGTGGAGAGGAAATGGTTACATAACAATGTTEST: gi|86020272|gb|DR316018.1|DR316018
genomic: ACGATGAAAGCTCAGCTTTATCGATTGTTGGAGCAACGAGCCTCCGAGTGgtaataacat ... caaattgcagCCGATACTTTGTCATTCCATTGTGGAGAGGAAATGGTTACATAACAATGTT
EST: ACGATGAAAGCTCAGCTTTATCGATTGTTGGAGCAACGAGCCTCCGAGTG CCGATACTTTGTCATTCCATCGTGGAGAGGAAATGGTTACEST: gi|124861111|gb|EH945548.1|EH945548
genomic: ACGATGAAAGCTCAGCTTTATCGATTGTTGGAGCAACGAGCCTCCGAGTGgtaataacat ... caaattgcagCCGATACTTTGTCATTCCATTGTGGAGAGGAAATGGTTAC
EST: CGATTGTTGGAGCAACGAGCCTCCGAGTG CCGATACTTTGTCATTCCATTGTGGAGAGGAAATGGTTACATAACAATGTT
genomic: CGATTGTTGGAGCAACGAGCCTCCGAGTGgtaataacat ... caaattgcagCCGATACTTTGTCATTCCATTGTGGAGAGGAAATGGTTACATAACAATGTT
gattataatcctttgatcttttttttctttttctaattgatgttgcaaattgcagCCGATACTTTGTCATTCCATTGTGGAGAGGAAATGGTTACATAACAATGTTTGCTCAAG
tttgatcttttttttc TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaataacatcattaagccttgttcttgtttgattataatcctttgatcttttttttctttttctaattgatgttgcaaattgcagCCGATACTTTGTCATTCCATTGTGGAGAGGAAATGGTTACATAACAATGTTTGCTCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA