1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gttagtccttggaacattcgaattttacactttttataagaaagaattgatttcgagttttttttattcaaaattgtgcagAGGCTAATATGTTGTATCTGGAGACACCTGTTGGAGTTGGATTTTCTTATGCAAATGAGAGCTCCTCTTATGAGGGTGTGAATGATAAGATCACTG
species | Arabidopsis thaliana |
transcript | AT2G33530.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: AACACAGCTGGAATCAAG AGGCTAATATGTTGTATCTGGAGACACCTGTTGGAGTTGGATTTTCTTATGEST: gi|125206804|gb|EL221758.1|EL221758
genomic: AACACAGCTGGAATCAAGgttagtcctt ... aattgtgcagAGGCTAATATGTTGTATCTGGAGACACCTGTTGGAGTTGGATTTTCTTATG
EST: GAAATCAACACAGCTGGAATCAAG AGGCTAATATGTTGTATCTGGAGACACCTGTTGGAGTTGGATTTTCTTATGEST: gi|86072740|gb|DR368497.1|DR368497
genomic: GAAATCAACACAGCTGGAATCAAGgttagtcctt ... aattgtgcagAGGCTAATATGTTGTATCTGGAGACACCTGTTGGAGTTGGATTTTCTTATG
EST: TAGACCAAAGGGATCAATCTTGGTGAGAAATCAACACAGCTGGAATCAAG AGGCTAATATGTTGTATCTGGAGACACCTGCTGGAGTTGGATTTTCTTATG
genomic: TAGACCAAAGGGATCAATCTTGGTGAGAAATCAACACAGCTGGAATCAAGgttagtcctt ... aattgtgcagAGGCTAATATGTTGTATCTGGAGACACCTGTTGGAGTTGGATTTTCTTATG
acactttttataagaaagaattgatttcgagttttttttattcaaaattgtgcagAGGCTAATATGTTGTATCTGGAGACACCTGTTGGAGTTGGATTTTCTTATGCAAATGAGAGCTCCTCTTATGAGGGTGTGAATGATAAGATCACTG
aattgat putative branch site (score: 4)
ttttataagaaagaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttagtccttggaacattcgaattttacactttttataagaaagaattgatttcgagttttttttattcaaaattgtgcagAGGCTAATATGTTGTATCTGGAGACACCTGTTGGAGTTGGATTTTCTTATGCAAATGAGAGCTCCTCTTATGAGGGTGTGAATGATAAGATCACTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA