Sequence
atgc intronic sequence ATGC exonic sequence...gttatcttctgtttaagaacttactcttttacattgttgtttttccccttggcaattgaaaacaactatatatcttacgtctgccattttatgcttgcagCGAAGTTAGCGATACAGAGGACGATGATTCAGATTCCTGCATCTGCACAATTATGTAGTCCACCAATCCGCAATCAACCACCATTAACATGGAGTTTAAC
Basic information
species | Arabidopsis thaliana |
transcript | AT2G33390.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|125016706|gb|EL088975.1|EL088975EST: AATGACATTAAAGGAGACAATCTTGCTGAGGTTTTAGTTTATGAACCAAG CGAAGTTAGCGA
genomic: AATGACATTAAAGGAGACAATCTTGCTGAGGTTTTAGTTTATGAACCAAGgtaatatcat ... atgcttgcagCGAAGTTAGCGA
EST:
gi|164102793|gb|ES055632.1|ES055632EST: AATGACATTAAAGGAGACAATCTTGCTGAGGTTTTAGTTTATGAACCAAG CGAAGTTAGCGATACAGAGGACGATGATTCAGATTCC
genomic: AATGACATTAAAGGAGACAATCTTGCTGAGGTTTTAGTTTATGAACCAAGgtaatatcat ... atgcttgcagCGAAGTTAGCGATACAGAGGACGATGATTCAGATTCC
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.cccttggcaattgaaaacaactatatatcttacgtctgccattttatgcttgcagCGAAGTTAGCGATACAGAGGACGATGATTCAGATTCCTGCATCTGCACAATTATGTAGTCCACCAATCCGCAATCAACCACCATTAACATGGAGTTTAAC
atcttac putative branch site (score: 3)
aaaacaactatatat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gttatcttctgtttaagaacttactcttttacattgttgtttttccccttggcaattgaaaacaactatatatcttacgtctgccattttatgcttgcagCGAAGTTAGCGATACAGAGGACGATGATTCAGATTCCTGCATCTGCACAATTATGTAGTCCACCAATCCGCAATCAACCACCATTAACATGGAGTTTAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - aagaact
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaacaa