Sequence
atgc intronic sequence ATGC exonic sequencegtatacatgttgtattattagatttcgtttcgtttttacattagcaagcgatgtgaattgatactgtattggtgttgctaatcgtgacagAGACTTGAAGGCTGAGAATCTTCTATTGAGCTCAGATGGACAATGGAAATTGTGTGATTTTGGAAGCGTTTCGACAAATCACAAGATTTTTGAAAGAGCA
Basic information
species | Arabidopsis thaliana |
transcript | AT2G32850.2 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT2G32850.2 (Arabidopsis thaliana), 3'ss of exon 2
lower sequence: GLYMA08G15920.1 (Glycine max), 3'ss of exon 3
---gtatacat-gttgtattattagatttcgtttcgtttttacat-tagcaagcgatgtgaattgatactgtattg-gtgttgctaatcgtgac----agAGACTTGAAGGCTGAGAATCTTCTATTGAGCTCAGATGGACAATGGAAATTGTGTGATTTTGGAAGCGTTTCGACAAATCACAAGATTTTTGAAAGAGCA
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tcttttgacatcattgaaaaattatgacaaatcagatggaagcctataaggtgctttctttattattaatttcttctattttcctctttgtgtttcctagAGACTTGAAAGCAGAGAATCTTTTATTAGGTTCAGATGGCTTATGGAAGTTATGTGATTTTGGAAGCACTTCCACCAATCACAAACGTTTTGAAAAGCCA
upper sequence: AT2G32850.2 (Arabidopsis thaliana), 3'ss of exon 2
lower sequence: GLYMA15G42460.1 (Glycine max), 3'ss of exon 3
gtatacatgttgtattattagatttcgtttcgtttttacattagcaagcgat---------gtgaattgatactgtattggtgttgctaatcgtgac--agAGACTTGAAGGCTGAGAATCTTCTATTGAGCTCAGATGGACAATGGAAATTGTGTGATTTTGGAAGCGTTTCGACAAATCACAAGATTTTTGAAAGAGCA
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-attatgttctgtttttcttaagatctaatttttttcataatataaggtactttattattaataaattgttttttctttcttttctctctgtgttttctagAGACTTGAAAGCAGAGAATCTTTTATTAGGTTCAGATGGCTTATGGAAGTTATGTGATTTTGGAAGCACTTCCACCAATCACAAACGTTTTGAGAAGCCA
upper sequence: AT2G32850.2 (Arabidopsis thaliana), 3'ss of exon 2
lower sequence: Vv13s0156g00640.t01 (Vitis vinifera), 3'ss of exon 3
---gtatacatgttgtattattagat-ttcgtttcgtttttacattagcaagcgatgtgaattgat--actgtattggtgttgctaatcgtga----cagAGACTTGAAGGCTGAGAATCTTCTATTGAGCTCAGATGGACAATGGAAATTGTGTGATTTTGGAAGCGTTTCGACAAATCACAAGATTTTTGAAAGAGCA
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aaaacacaatagattttttcctatgtattaataaaagatatgcacagaaatttgtttcgacttatttgacattctccattttcttcattgtattcttcagAGACTTAAAAGCTGAGAATCTTCTATTGGGCCCTGATGGATTATGGAAGTTGTGTGATTTTGGAAGCACCTCCACCAATCATAAGCGCTTTGAGAAGCCTMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|116429362|gb|EG471954.1|EG471954EST: TGTAATGCTGTCTTTGCAATGCATTGTCAATCCCCACGCATTGCTCACAG AGACTTGAAGGCTGAGAATCTTCTATTGAGCTCAGATGGACAATGGAAATT
genomic: TGTAATGCTGTCTTTGCAATGCATTGTCAATCCCCACGCATTGCTCACAGgtatacatgt ... atcgtgacagAGACTTGAAGGCTGAGAATCTTCTATTGAGCTCAGATGGACAATGGAAATT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttacattagcaagcgatgtgaattgatactgtattggtgttgctaatcgtgacagAGACTTGAAGGCTGAGAATCTTCTATTGAGCTCAGATGGACAATGGAAATTGTGTGATTTTGGAAGCGTTTCGACAAATCACAAGATTTTTGAAAGAGCA
tgctaat putative branch site (score: 2)
aattgata TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtatacatgttgtattattagatttcgtttcgtttttacattagcaagcgatgtgaattgatactgtattggtgttgctaatcgtgacagAGACTTGAAGGCTGAGAATCTTCTATTGAGCTCAGATGGACAATGGAAATTGTGTGATTTTGGAAGCGTTTCGACAAATCACAAGATTTTTGAAAGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA