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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtgtttcctcgtttcatctgttctgttcttttggttatgagtttccagtttgttctgttcttctcttttggtcttgtgtctctaatggtttctgtcaactctttcttcagGTACAACTTTGATCCTGTGAACGAACAACCACTACCAGGACGGTTTGAATGGACGAAGGTAGATGATTAGAAACAACAAAAAAATGGGGGGTTAATAGTT

Basic information

species Arabidopsis thaliana
transcript AT2G32710.2
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G32710.1 (Arabidopsis thaliana), 3'ss of exon 2
lower sequence: GRMZM2G037926_T01 (Zea mays), 3'ss of exon 2
gtatgtgtttcctcgtttcatctgttctgttctt--ttggttatgagtttccagtttgttctgttcttctcttttg------gtcttg---tgtctctaatggtttctgtc----aactctttcttcagGTACAACTTTGATCCTGTGAACGAACAACCACTACCAGGACGGTTTGAATGGACGAAGGTAGATGATTAGAAACAACAAAAAAATGGGGGGTTA-ATAGTT
||| |  || | |  | |  | ||| |  |||||  ||  |||| | ||       || |   |||  ||  | |       | ||||   |  |   ||   | | ||        ||   ||||||||||||||||||||||||| || ||    || || |||||  |||||||||||  |||| ||||    ||||  ||    | |   | |  |    || |  
gtacgatttgcataatctgttttgt-cgattcttgattcattataaattattttgctgatgcattcggcttctcttaacgatgccttgcactaaccacaaacatgtatgatgcatggcttaatcttcagGTACAACTTTGATCCTGTAAATGACTGCCCTCTCCCAGGCAGGTTTGAATGGGTGAAGCTAGACTGATAGATTCAGAGGACATGAGAGCAGCAGCATGGA-
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86087662|gb|DR383421.1|DR383421
EST:     TTTTTCTCGGGTGCTGAAGAAGAACAACAGAAGCAATTCATTGAGAA                         GTACAACTTTGATCCTGTGAACGAACAACCACTACCAGGACGGTTTGAATG
genomic: TTTTTCTCGGGTGCTGAAGAAGAACAACAGAAGCAATTCATTGAGAAgtatgtgttt ... ctttcttcagGTACAACTTTGATCCTGTGAACGAACAACCACTACCAGGACGGTTTGAATG
EST: gi|125034868|gb|EL107137.1|EL107137
EST:     GAGTTTTTCTCGGGTGCTGAAGAAGAACAACAGAAGCAATTCATTGAGAA                         GTACAACTTTGAT
genomic: GAGTTTTTCTCGGGTGCTGAAGAAGAACAACAGAAGCAATTCATTGAGAAgtatgtgttt ... ctttcttcagGTACAACTTTGAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgttcttctcttttggtcttgtgtctctaatggtttctgtcaactctttcttcagGTACAACTTTGATCCTGTGAACGAACAACCACTACCAGGACGGTTTGAATGGACGAAGGTAGATGATTAGAAACAACAAAAAAATGGGGGGTTAATAGTT
                        ctctaat  putative branch site (score: 3)
                                       tcaactctttcttc  putative PPT