1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtatgtttgtttgatcatttcttctctctttcgattttgaatgtgtttcgagatctgatatcgaaaatgttgggttttagGTGAGAAGGGGAGGAGAATTAGGGAATTGACATCTCTTGTCCAGAAGAGATTCAAGTTTCCAGTTGACAGTGTTGAGCTCTATGCTGAGAAGGTTAACAA
species | Arabidopsis thaliana |
transcript | AT2G31610.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TGAGGACTGAGATTATCTATTCAGAGCTACTCGTACTCAGAATGTTCTTG GTGAGAAGGGGAGGAGAATTAGGGAEST: gi|125147817|gb|EL181839.1|EL181839
genomic: TGAGGACTGAGATTATC-A-TCAGAGCTACTCGTACTCAGAATGTTCTTGgtatgtttgt ... tgggttttagGTGAGAAGGGGAGGAGAATTAGGGA
EST: AATGAGGACTGAGATTATCATCAGAGCTACTCGTACTCAGAATGTTCTTG GTGAGAAGGGGAGGAGAAEST: gi|163992665|gb|ES132302.1|ES132302
genomic: AATGAGGACTGAGATTATCATCAGAGCTACTCGTACTCAGAATGTTCTTGgtatgtttgt ... tgggttttagGTGAGAAGGGGAGGAGAA
EST: AATGAGGACTGAGATTATCATCAGAGCTACTCGTACTCAGAATGTTCTTG GTGAGAAGGGGAGGAGAATT-GGGAATTGACATCTCTEST: gi|116442865|gb|EG485457.1|EG485457
genomic: AATGAGGACTGAGATTATCATCAGAGCTACTCGTACTCAGAATGTTCTTGgtatgtttgt ... tgggttttagGTGAGAAGGGGAGGAGAATTAGGGAATTGACATCTCT
EST: AATGAGGACTGAGATTATCATCAGAGCTACTCGTACTCAGAATGTTCTTG GTGAGAAGGGGAGGAGAATTAGGGAATTGACATCTCTTGTCCAGAAGAGATEST: gi|164227744|gb|EL998396.1|EL998396
genomic: AATGAGGACTGAGATTATCATCAGAGCTACTCGTACTCAGAATGTTCTTGgtatgtttgt ... tgggttttagGTGAGAAGGGGAGGAGAATTAGGGAATTGACATCTCTTGTCCAGAAGAGAT
EST: GAATGTTCTTG GTGAGAAGGGGAGGAGAATTAGGGAATTGACATCTCTTGTCCAGAAGAGATEST: gi|152035868|gb|BP863417.2|BP863417
genomic: GAATGTTCTTGgtatgtttgt ... tgggttttagGTGAGAAGGGGAGGAGAATTAGGGAATTGACATCTCTTGTCCAGAAGAGAT
EST: AATGAGGACTGAGATTATCATCAGAGCTACTCGTACTCAGAATGTTCTTG GTGAGAAGGGGAGGAGAATTAGGGAATTGACATCTCTTGTCCAGAAGAGATEST: gi|124928807|gb|EL006416.1|EL006416
genomic: AATGAGGACTGAGATTATCATCAGAGCTACTCGTACTCAGAATGTTCTTGgtatgtttgt ... tgggttttagGTGAGAAGGGGAGGAGAATTAGGGAATTGACATCTCTTGTCCAGAAGAGAT
EST: ATTATCATCAGAGCTACTCGTACTCAGAATGTTCTTG GTGAGAAGGGGAGGAGAATTAGGGAATTGACATCTCTTGTCCAGAAGAGATEST: gi|164131112|gb|ES086084.1|ES086084
genomic: ATTATCATCAGAGCTACTCGTACTCAGAATGTTCTTGgtatgtttgt ... tgggttttagGTGAGAAGGGGAGGAGAATTAGGGAATTGACATCTCTTGTCCAGAAGAGAT
EST: GAATGTTCTTG GTGAGAAGGGGAGGAGAATTAGGGAATTGACATCTCTTGTCCAGAAGAGATEST: gi|164104852|gb|ES018115.1|ES018115
genomic: GAATGTTCTTGgtatgtttgt ... tgggttttagGTGAGAAGGGGAGGAGAATTAGGGAATTGACATCTCTTGTCCAGAAGAGAT
EST: GAATGTTCTTG GTGAGAAGGGGGAGGAGAATTAGGGAATTGACATCTCTTGTCCAGAAGAGAEST: gi|163974585|gb|EL989888.1|EL989888
genomic: GAATGTTCTTGgtatgtttgt ... tgggttttagGTGAGAA-GGGGAGGAGAATTAGGGAATTGACATCTCTTGTCCAGAAGAGA
EST: AATGAGGACTGAGATTATCATCAGAGCTACTCGTACTCAGAATGTTCTTG GTGAGGGAGGGGAGGAGAAEST: gi|164057613|gb|ES172900.1|ES172900
genomic: AATGAGGACTGAGATTATCATCAGAGCTACTCGTACTCAGAATGTTCTTGgtatgtttgt ... tgggttttagGTGAGA-AGGGGAGGAGAA
EST: AATGAGGACTGAGATTATCATCAGAGCTACTCGTACTCAGAATGTTCTTG GTGAGGAGGGGAGGAGAAEST: gi|163983190|gb|ES114370.1|ES114370
genomic: AATGAGGACTGAGATTATCATCAGAGCTACTCGTACTCAGAATGTTCTTGgtatgtttgt ... tgggttttagGTGAGAAGGGGAGGAGAA
EST: GAGGACTGAGATTATCATCAGAGCTACTCGTACTCAGAATGTTCTTG GTGAGAAGGGGAGGAGAATTAGGGAATTGACATCTCTTGTCCAGAAGAG
genomic: GAGGACTGAGATTATCATCAGAGCTACTCGTACTCAGAATGTTCTTGgtatgtttgt ... tgggttttagGTGAGAAGGGGAGGAGAATTAGGGAATTGACATCTCTTGTCCAGAAGAG
ctctttcgattttgaatgtgtttcgagatctgatatcgaaaatgttgggttttagGTGAGAAGGGGAGGAGAATTAGGGAATTGACATCTCTTGTCCAGAAGAGATTCAAGTTTCCAGTTGACAGTGTTGAGCTCTATGCTGAGAAGGTTAACAA
atctgat putative branch site (score: 4)
attttgaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgtttgtttgatcatttcttctctctttcgattttgaatgtgtttcgagatctgatatcgaaaatgttgggttttagGTGAGAAGGGGAGGAGAATTAGGGAATTGACATCTCTTGTCCAGAAGAGATTCAAGTTTCCAGTTGACAGTGTTGAGCTCTATGCTGAGAAGGTTAACAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG