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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaaataacactgatattgtagaggccaaattttgtaaccgttttttaatgcgttactattagtacaaaggcttacttttgggaaccttctgctatagAAACGAGGTGCAGAACTGGTGGCACTTGAGGGAAGATCTAGGCAAGTTTGGGAAAACGTGTGGTCTGATTCTTGCTTGGACTTACACCTCATGTCTTCTG

Basic information

species Arabidopsis thaliana
transcript AT2G31400.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124999128|gb|EL071397.1|EL071397
EST:     TCTACAATGCCCTAACTGACATGCTTTGGCACTTTGGCCAG                         AAACGAGGTGCAGAACTGGTGGCACTTGAGGGAAGATCTAGG
genomic: TCTACAATGCCCTAACTGACATGCTTTGGCACTTTGGCCAGgtaaaataac ... tctgctatagAAACGAGGTGCAGAACTGGTGGCACTTGAGGGAAGATCTAGG
EST: gi|86022312|gb|DR318065.1|DR318065
EST:     CTTCTGCCTTCTACAATGCCCTAACTGACATGCTTTGGCACTTTGGCCAG                         AAACGAGGTGCAGAACTGGTGGCACTTGAGGGAAGATCTAGGCAAGTTTGG
genomic: CTTCTGCCTTCTACAATGCCCTAACTGACATGCTTTGGCACTTTGGCCAGgtaaaataac ... tctgctatagAAACGAGGTGCAGAACTGGTGGCACTTGAGGGAAGATCTAGGCAAGTTTGG
EST: gi|124967534|gb|EL041564.1|EL041564
EST:     C-TCTGCCTTCTACAATGCCCTAACTGACATGCTTTGGCACTTTGGCCAG                         AAACGAGGTGCAGAACTGGTGG
genomic: CTTCTGCCTTCTACAATGCCCTAACTGACATGCTTTGGCACTTTGGCCAGgtaaaataac ... tctgctatagAAACGAGGTGCAGAACTGGTGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttttaatgcgttactattagtacaaaggcttacttttgggaaccttctgctatagAAACGAGGTGCAGAACTGGTGGCACTTGAGGGAAGATCTAGGCAAGTTTGGGAAAACGTGTGGTCTGATTCTTGCTTGGACTTACACCTCATGTCTTCTG
                          ggcttac  putative branch site (score: 3)
                                          ccttctgct  putative PPT
          ttactatta  TA-rich tract