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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagaactggtttaccaaactgatgaatactcaaatatcctggtttgtaacttgttttgacaactatataaatcacttgttgtacattagGAGAAAGAGCAACTCGATCTCGGGGAGCTGGATTGGCTTGCAGAGATGGGTCTGTTTGGTGACCAGCCTGATCAAGAGGCTCTACCGGTAGCCGAAGTTC

Basic information

species Arabidopsis thaliana
transcript AT2G31380.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124764027|gb|EH854157.1|EH854157
EST:     GGGCTACCGATGAATTCTTCAGCTACTCTGATCTTGACTGCAGTAATAAG                         GAGAAAGAGCAACTCG
genomic: GGGCTACCGATGAATTCTTCAGCTACTCTGATCTTGACTGCAGTAATAAGgtgagaactg ... tgtacattagGAGAAAGAGCAACTCG
EST: gi|86087973|gb|DR383732.1|DR383732
EST:     GGGCTACCGATGAATTCTTCAGCTACTCTGATCTTGACTGCAGTAATAAG                         GAGAAAGAGCAACTCGATCTCGGGGAGCTGGATTGGCTTGCAGAGATGGGT
genomic: GGGCTACCGATGAATTCTTCAGCTACTCTGATCTTGACTGCAGTAATAAGgtgagaactg ... tgtacattagGAGAAAGAGCAACTCGATCTCGGGGAGCTGGATTGGCTTGCAGAGATGGGT
EST: gi|125241090|gb|EL255175.1|EL255175
EST:     CTTGACTGCAGTAATAAG                         GAGAAAGAGCAACTCGATCTCGGGGAGCTGGATTGGCTTGCAGAGATGGGT
genomic: CTTGACTGCAGTAATAAGgtgagaactg ... tgtacattagGAGAAAGAGCAACTCGATCTCGGGGAGCTGGATTGGCTTGCAGAGATGGGT
EST: gi|164122622|gb|ES037531.1|ES037531
EST:     GATCTTGACTGCAGTAATAAG                         GAGAAAGAGCAACTCGATCTCGGGGAGCTGGATTGGCTTGCAGAGATGGGT
genomic: GATCTTGACTGCAGTAATAAGgtgagaactg ... tgtacattagGAGAAAGAGCAACTCGATCTCGGGGAGCTGGATTGGCTTGCAGAGATGGGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tatcctggtttgtaacttgttttgacaactatataaatcacttgttgtacattagGAGAAAGAGCAACTCGATCTCGGGGAGCTGGATTGGCTTGCAGAGATGGGTCTGTTTGGTGACCAGCCTGATCAAGAGGCTCTACCGGTAGCCGAAGTTC
                        acaactatataaat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtgagaactggtttaccaaactgatgaatactcaaatatcctggtttgtaacttgttttgacaactatataaatcacttgttgtacattagGAGAAAGAGCAACTCGATCTCGGGGAGCTGGATTGGCTTGCAGAGATGGGTCTGTTTGGTGACCAGCCTGATCAAGAGGCTCTACCGGTAGCCGAAGTTC

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG