1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtactatctgattattacacattgatatgttttgtaatcctgtactactcctagagcttgtgcttacttataatttctggtgcagGTAAGTGTTGACGTTCCTGACGTTAAGGGGAGAACAGATATTCTCAAGGTTCATGCCGGCAATAAGAAGTTCGACAATGATGTTTCACTTGAAATAATAG
species | Arabidopsis thaliana |
transcript | AT2G30950.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CAGACATTCTTGACTCTGCTTTGTTGAGGCCAGGACGGTTTGACCGGCAG GTAAGTGTTGACGTTCCTGACGTTAAGGGGAGAACAGATATTCTCAAGGTTEST: gi|47831928|gb|CK121612.1|CK121612
genomic: CAGACATTCTTGACTCTGCTTTGTTGAGGCCAGGACGGTTTGACCGGCAGgtactatctg ... tctggtgcagGTAAGTGTTGACGTTCCTGACGTTAAGGGGAGAACAGATATTCTCAAGGTT
EST: CAGACATTCTTGACTCTGCTTTGTTGAGGCCAGGACGGTTTGACCGGCAG GTAAGTGTTGACGTTCCTGACGTTAAGGGGAGAACAGATATTCTCAAGGTTEST: gi|163997752|gb|ES096944.1|ES096944
genomic: CAGACATTCTTGACTCTGCTTTGTTGAGGCCAGGACGGTTTGACCGGCAGgtactatctg ... tctggtgcagGTAAGTGTTGACGTTCCTGACGTTAAGGGGAGAACAGATATTCTCAAGGTT
EST: CAGACATTCTTGACTCTGCTTTGTTGAGGCCAGGACGGTTTGACCGGCAG GTAAGTGTTGACGTTCCTGACGTTAAGGGGEST: gi|124788459|gb|EH878138.1|EH878138
genomic: CAGACATTCTTGACTCTGCTTTGTTGAGGCCAGGACGGTTTGACCGGCAGgtactatctg ... tctggtgcagGTAAGTGTTGACGTTCCTGACGTTAAGGGG
EST: CAGACATTCTTGACTCTGCTTTGTTGAGGCCAGGACGGTTTGACCGGCAG GTAAGTGTTGACGEST: gi|164164193|gb|ES125932.1|ES125932
genomic: CAGACATTCTTGACTCTGCTTTGTTGAGGCCAGGACGGTTTGACCGGCAGgtactatctg ... tctggtgcagGTAAGTGTTGACG
EST: CAGACATTCTTGACTCTGCTTTGTTGAGGCCAGGACGGTTTGACCGGCAG GTAAGTGTTGACGTTCCTGACGTTAAGGGGAGAACAGATATTCTCAAGGTT
genomic: CAGACATTCTTGACTCTGCTTTGTTGAGGCCAGGACGGTTTGACCGGCAGgtactatctg ... tctggtgcagGTAAGTGTTGACGTTCCTGACGTTAAGGGGAGAACAGATATTCTCAAGGTT
tttgtaatcctgtactactcctagagcttgtgcttacttataatttctggtgcagGTAAGTGTTGACGTTCCTGACGTTAAGGGGAGAACAGATATTCTCAAGGTTCATGCCGGCAATAAGAAGTTCGACAATGATGTTTCACTTGAAATAATAG
tgcttac putative branch site (score: 2)
tttct putative PPT
ttacttataatttct TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtactatctgattattacacattgatatgttttgtaatcctgtactactcctagagcttgtgcttacttataatttctggtgcagGTAAGTGTTGACGTTCCTGACGTTAAGGGGAGAACAGATATTCTCAAGGTTCATGCCGGCAATAAGAAGTTCGACAATGATGTTTCACTTGAAATAATAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT