1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...tgagatgtatttgagatgttctgtcaacaacaatcattgtcatcatgtcgaagaagctcatgatttgctatatctttcttctaacaactgttttttgcagATACCAACAACTCCTCTGAGTCGGTTGCCCTTGAAGCAAACTTTACATTCGTGGCTCGGGATGCTCAGACAGGCAAGTCAGCTCCAATTAACCAAGTCGT
species | Arabidopsis thaliana |
transcript | AT2G30720.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GGTTGGTAGATCATCCATGGAGATGCAATTACAAGTACTCCAAATTCAAG ATACCAACAACTCCTCTGAGTCGGTTGCCCTTGAAGCAAACTTTACATTCGEST: gi|116422689|gb|EG465281.1|EG465281
genomic: GGTTGGTAGATCATCCATGGAGATGCAATTACAAGTACTCCAAATTCAAGgtatcagttt ... ttttttgcagATACCAACAACTCCTCTGAGTCGGTTGCCCTTGAAGCAAACTTTACATTCG
EST: GGTTGGTAGATCATCCATGGAGATGCAATTACAAGTACTCCAAATTCAAG ATACCAACAACTCCTCTGAGTCGGTTGCCCTTGAAGCAAACTTTACATTCG
genomic: GGTTGGTAGATCATCCATGGAGATGCAATTACAAGTACTCCAAATTCAAGgtatcagttt ... ttttttgcagATACCAACAACTCCTCTGAGTCGGTTGCCCTTGAAGCAAACTTTACATTCG
tgtcgaagaagctcatgatttgctatatctttcttctaacaactgttttttgcagATACCAACAACTCCTCTGAGTCGGTTGCCCTTGAAGCAAACTTTACATTCGTGGCTCGGGATGCTCAGACAGGCAAGTCAGCTCCAATTAACCAAGTCGT
ttctaac putative branch site (score: 1)
ctgtttttt putative PPT
tatatcttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgagatgtatttgagatgttctgtcaacaacaatcattgtcatcatgtcgaagaagctcatgatttgctatatctttcttctaacaactgttttttgcagATACCAACAACTCCTCTGAGTCGGTTGCCCTTGAAGCAAACTTTACATTCGTGGCTCGGGATGCTCAGACAGGCAAGTCAGCTCCAATTAACCAAGTCGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - caacaac
- - - - - - - - - - - - - - - - - - - - - - - - cgaagaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aacaact