1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...gagatcgcaaaacctagttatagaatcgttgcgtttgagttgtttcgctggtgatgtagaaaccctaattttggttgtcctgtgtttggtacttgctcagAATCCAATGGCAACGATAAGGAACTTGAAGATAAAAACATCAACATGTAAAAGGATTGTGAAAGAGCTTCACTCTTATGAGAAAGAAGTTGAGAGAGAAG
species | Arabidopsis thaliana |
transcript | AT2G30410.2 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CCTCTCTCTCAAATTCATCGGAAGCAACCTTCTTCTCCCATCATCGCCTG AATCCAATGGCAACGATAAGGAACTTGAAGATAAAAACATCAACATGTAAAEST: gi|125013695|gb|EL085964.1|EL085964
genomic: CCTCTCTCTCAAATTCATCGGAAGCAACCTTCTTCTCCCATCATCGCCTGgttcgtttct ... acttgctcagAATCCAATGGCAACGATAAGGAACTTGAAGATAAAAACATCAACATGTAAA
EST: TCCCATCATCGCCTG AATCCAATGGCAACGATAAGGAACTTGAAGATAAAAACATCAACATGTAAAEST: gi|86074489|gb|DR370246.1|DR370246
genomic: TCCCATCATCGCCTGgttcgtttct ... acttgctcagAATCCAATGGCAACGATAAGGAACTTGAAGATAAAAACATCAACATGTAAA
EST: CCTCTCTCTCAAATTCATCGGAAGCAACCTTCTTCTCCCATCATCGCCTG AATCCAATGGCAACGATAAGGAACTTGAAGATWAAAACATCWACATGTAAA
genomic: CCTCTCTCTCAAATTCATCGGAAGCAACCTTCTTCTCCCATCATCGCCTGgttcgtttct ... acttgctcagAATCCAATGGCAACGATAAGGAACTTGAAGATAAAAACATCAACATGTAAA
cgctggtgatgtagaaaccctaattttggttgtcctgtgtttggtacttgctcagAATCCAATGGCAACGATAAGGAACTTGAAGATAAAAACATCAACATGTAAAAGGATTGTGAAAGAGCTTCACTCTTATGAGAAAGAAGTTGAGAGAGAAG
ccctaat putative branch site (score: 3)
cttgctc putative PPT
taatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gagatcgcaaaacctagttatagaatcgttgcgtttgagttgtttcgctggtgatgtagaaaccctaattttggttgtcctgtgtttggtacttgctcagAATCCAATGGCAACGATAAGGAACTTGAAGATAAAAACATCAACATGTAAAAGGATTGTGAAAGAGCTTCACTCTTATGAGAAAGAAGTTGAGAGAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT