1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtacgatttttttgattctgtcttgtaataatttggtcttggttttagctgagtgtgttggtatgataagctgtgcagGGTGGTATTGAAGAAGGAAGATGGAAGAGAGCTTCGTTCTTTCAAATTTAAAGACAATGATCAAAG
species | Arabidopsis thaliana |
transcript | AT2G29720.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GCCATCTCCATCGGACCTCAACTCCGAAAGCAGTTTCTTGAAATGCAAGG GGTGGTATTGAAGAAGGAAGATGGAAGAGAGCTTCGTTCTTTCAAAEST: gi|86037181|gb|DR332936.1|DR332936
genomic: GCCATCTCCATCGGACCTCAACTCCGAAAGCAGTTTCTTGAAATGCAAGGgtacgatttt ... agctgtgcagGGTGGTATTGAAGAAGGAAGATGGAAGAGAGCTTCGTTCTTTCAAA
EST: GCCATCTCCATCGGACCTCAACTCCGAAAGCAGTTTCTTGAAATGCAAGG GGTGGTATTGAAGAAGGAAGATGGAAGAGAGCTTCGTTCTTTCAAATTTAAEST: gi|86037180|gb|DR332935.1|DR332935
genomic: GCCATCTCCATCGGACCTCAACTCCGAAAGCAGTTTCTTGAAATGCAAGGgtacgatttt ... agctgtgcagGGTGGTATTGAAGAAGGAAGATGGAAGAGAGCTTCGTTCTTTCAAATTTAA
EST: GCCATCTCCATCGGACCTCAACTCCGAAAGCAGTTTCTTGAAATGCAAGG GGTGGTATTGAAGAAGGAAGATGGAAGAGAGCTTCGTTCTTTCAAATTTAA
genomic: GCCATCTCCATCGGACCTCAACTCCGAAAGCAGTTTCTTGAAATGCAAGGgtacgatttt ... agctgtgcagGGTGGTATTGAAGAAGGAAGATGGAAGAGAGCTTCGTTCTTTCAAATTTAA
tgtaataatttggtcttggttttagctgagtgtgttggtatgataagctgtgcagGGTGGTATTGAAGAAGGAAGATGGAAGAGAGCTTCGTTCTTTCAAATTTAAAGACAATGATCAAAG
tatgataa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacgatttttttgattctgtcttgtaataatttggtcttggttttagctgagtgtgttggtatgataagctgtgcagGGTGGTATTGAAGAAGGAAGATGGAAGAGAGCTTCGTTCTTTCAAATTTAAAGACAATGATCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT