Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtataatttccttaactgatagattgtaatacaaaaaaaagagttttttttccaatatgaagattactacttagtggttagttttgcagTGGTGCTCCTCGAAGAACGAATGAAAATGCAAAGGTTATTATTACTACTATTTTGGGGATAGTGTTTGGGACTTTTATTGGTATCACATTACCTTCACTT

Basic information

species Arabidopsis thaliana
transcript AT2G28310.3
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125046784|gb|EL119053.1|EL119053
EST:     TGGGAACAATGCACCGCAG                         TGGTGCTCCTCGAAGAACGAATGAAAATGCAAAGGTTATTATTACTACTAT
genomic: TGGGAACAATGCACCGCAGgtataatttc ... agttttgcagTGGTGCTCCTCGAAGAACGAATGAAAATGCAAAGGTTATTATTACTACTAT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aaaaaagagttttttttccaatatgaagattactacttagtggttagttttgcagTGGTGCTCCTCGAAGAACGAATGAAAATGCAAAGGTTATTATTACTACTATTTTGGGGATAGTGTTTGGGACTTTTATTGGTATCACATTACCTTCACTT
         ttttttttccaatat  TA-rich tract