Sequence
atgc intronic sequence ATGC exonic sequence...gctaatctaatcacctaaagggtatatggagctgttcccttttggtgattgtcttgtttcttgtaatctcaattttgagtttgtgtgttgttacttgcagGTGGAGTATCTTCCTATATCATCAATGGAAAAGGCACAAAAGGTGATGGAGGAGTTCTTGGAGATATGGAATGAAGCTCTGGCTAAAAGGTCGTTGCCGG
Basic information
species | Arabidopsis thaliana |
transcript | AT2G28230.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|124859283|gb|EH943720.1|EH943720EST: CATTGTCATGGAG GTGGAGTATCTTCCTATATCATCAATGGAAAAGGCACAAAAGGTGATGGAG
genomic: CATTGTCATGGAGgtaaacaaag ... ttacttgcagGTGGAGTATCTTCCTATATCATCAATGGAAAAGGCACAAAAGGTGATGGAG
EST:
gi|163971621|gb|ES136781.1|ES136781EST: TTCTGAGAATGTTAGAGGCTATTGTCATGGAG GTGGAGTATCTTCCTATATCATCAATGGAAAAGGCACAAAAGGTGATGGAG
genomic: TTCTGAGAATGTTAGAGGC-ATTGTCATGGAGgtaaacaaag ... ttacttgcagGTGGAGTATCTTCCTATATCATCAATGGAAAAGGCACAAAAGGTGATGGAG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tgattgtcttgtttcttgtaatctcaattttgagtttgtgtgttgttacttgcagGTGGAGTATCTTCCTATATCATCAATGGAAAAGGCACAAAAGGTGATGGAGGAGTTCTTGGAGATATGGAATGAAGCTCTGGCTAAAAGGTCGTTGCCGG
tcaatttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gctaatctaatcacctaaagggtatatggagctgttcccttttggtgattgtcttgtttcttgtaatctcaattttgagtttgtgtgttgttacttgcagGTGGAGTATCTTCCTATATCATCAATGGAAAAGGCACAAAAGGTGATGGAGGAGTTCTTGGAGATATGGAATGAAGCTCTGGCTAAAAGGTCGTTGCCGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- -aatctaa
- - - - - - acctaaa
- - - - - - - - - - - - - - - -ctgttcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -atctcaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -agtttgt