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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtgtgattcttttggactctctactttggacaatgatgattgcaaatgtaatttcaactttttttttggattatagGAGGAGGTTGCAAATGTTGTATCGACTGTACTTTTTGTCTCTGGAATCACTACACTGTTGCATACTTCGTTTGGGTCGAGGCTTCCTTTGATTCAAGGTC

Basic information

species Arabidopsis thaliana
transcript AT2G27810.2
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G27810.3 (Arabidopsis thaliana), 3'ss of exon 2
lower sequence: GLYMA17G05280.1 (Glycine max), 3'ss of exon 2
-------------gtaagtgtgattcttttggactctctactttggacaatgatgattg---caaatg--taatttcaact--ttttttttggattatagGAGGAGGTTGCAAATGTTGTATCGACTGTACTTTTTGTCTCTGGAATCACTACACTGTTGCATACTTCGTTTGGGTCGAGGCTTCCTTTGATTCAAGGTC
               ||    ||      || | | |    | |  |   || ||| |     || ||  || | | | ||  | | | |  |  | ||||||||   |      ||  | |||||||| || ||||| |||||| | |||||||||||||||||    |||||||||||| | || ||||| ||||| |
ttaaaaagtttatacaaacaggacctaactgaatttttatttatttattttggtgaatttattaagtggttattcttatctgatgtgtgtgtgggtgtagGAGGATACTTGTTCGGTGATTTCGACTGTGCTCTTTGTATCTGGAGTGACTACACTGTTGCATACAAGTTTTGGGTCGAGGTTGCCCTTGATACAAGGGC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125245678|gb|EL259763.1|EL259763
EST:     CATTGACTCTGGTTCCACTTGTTATTGTTCCTGCAATGGGAGGTTCACAT                         GAGGAGGTTGCAAATGTTGTATCGAC
genomic: CATTGATTCTGGTTCCACTTGTTATTGTTCCTGCAATGGGAGGTTCACATgtaagtgtga ... tggattatagGAGGAGGTTGCAAATGTTGTATCGAC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tactttggacaatgatgattgcaaatgtaatttcaactttttttttggattatagGAGGAGGTTGCAAATGTTGTATCGACTGTACTTTTTGTCTCTGGAATCACTACACTGTTGCATACTTCGTTTGGGTCGAGGCTTCCTTTGATTCAAGGTC
                              tttcaacttttttttt  CT-rich tract
                           taatttcaactttttt  TA-rich tract