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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtataaatgatatgcttgcacattagttgagaagttggtgctaacttattgttaatcttgatgattgcaaatatcatttgcagGCTAAGACTGCAAAGTCCATGGTTGGGGTATTCTTGTCAGTCGATGATTCACAATTGCTGACAGTATCAGAGTATATGACACGAAGGG

Basic information

species Arabidopsis thaliana
transcript AT2G26890.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116411617|gb|EG454209.1|EG454209
EST:     CTTTTAGAGCTGCACCCGGGACAACAAATTCCTCCATTGTCGCAAGTTTG                         GCTAAGACTGCAAAGTCCATGGTTGGGGTATTCTTGTCAGTCGATGATTCA
genomic: CTTTTAGAGCTGCACCCGGGACAACAAATTCCTCCATTGTCGCAAGTTTGgtataaatga ... tcatttgcagGCTAAGACTGCAAAGTCCATGGTTGGGGTATTCTTGTCAGTCGATGATTCA
EST: gi|116417861|gb|EG460453.1|EG460453
EST:     CTTTTAGAGCTGCACACGGGACAACAAATTCCTCCATTGTCGCAAGTTTG                         GCTAAGACTGCAAAGTCCATGGTTGGGGTATTCTTGTCAGTCGATGATTCA
genomic: CTTTTAGAGCTGCACCCGGGACAACAAATTCCTCCATTGTCGCAAGTTTGgtataaatga ... tcatttgcagGCTAAGACTGCAAAGTCCATGGTTGGGGTATTCTTGTCAGTCGATGATTCA
EST: gi|116411629|gb|EG454221.1|EG454221
EST:     CTTTTAGAGCTGCACCCGGGACAACAAATTCCTCCATTGTCGCAAGTTTG                         GCTAAGACTGCAAAGTCCATGGTTGGGGTATTCTTGTCAGTCGATGATTCA
genomic: CTTTTAGAGCTGCACCCGGGACAACAAATTCCTCCATTGTCGCAAGTTTGgtataaatga ... tcatttgcagGCTAAGACTGCAAAGTCCATGGTTGGGGTATTCTTGTCAGTCGATGATTCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gagaagttggtgctaacttattgttaatcttgatgattgcaaatatcatttgcagGCTAAGACTGCAAAGTCCATGGTTGGGGTATTCTTGTCAGTCGATGATTCACAATTGCTGACAGTATCAGAGTATATGACACGAAGGG
             taacttattgttaat  TA-rich tract