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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtattagtatctgcttctttattaagtagaatctggttatgcatggactttgttagttttgtatcaaattataagaactttttaatctttatcaaatgtgtgtgtttgtggcagTGTTGCTTACCACCAAATATGGGTGGACATACTTGCAAGTATGGATTCAAACACACCGACTTTGGAACAGCGCGTACATGGGATAATGCACTGAGCTCGA

Basic information

species Arabidopsis thaliana
transcript AT2G26070.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19877202|gb|AU238033.1|AU238033
EST:     ATTTTGCATTTGGTCCTCCTGCTCGCTATCTCCAACTCGATAGAACCAAG                         TGTTGCTTACCACCAAATATGGGTGGACATACTTGCAAGTATGGATTCAAA
genomic: ATTTTGCATTTGGTCCTCCTGCTCGCTATCTCCAACTCGATAGAACCAAGgtattagtat ... tttgtggcagTGTTGCTTACCACCAAATATGGGTGGACATACTTGCAAGTATGGATTCAAA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgtatcaaattataagaactttttaatctttatcaaatgtgtgtgtttgtggcagTGTTGCTTACCACCAAATATGGGTGGACATACTTGCAAGTATGGATTCAAACACACCGACTTTGGAACAGCGCGTACATGGGATAATGCACTGAGCTCGA
                    ttttaat  putative branch site (score: 3)
      aaattataagaacttt  TA-rich tract