1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtaactttatgttttacataaccaatattatgcttggctgctgaatgatcctttattatatctatccttactcaaatactatgtttatacgcagtgaaattatatatagctatgtgcatgataatgtctaagtaaatagtttttttctttttttttttcttgcctacagGAGCATTTGGAGAGCAATGAGGGAGACCCTGAATTGCTTGTTTTTGTACC
species | Arabidopsis thaliana |
transcript | AT2G25950.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GTGCAAAATCAGTCTTCAAAGCGTGGGAACAGCGATTACACTCTTCTGGG GAGCATTTGGAGAGCAATGAGGGAGACCCTGAATTGCTTGTTTTTGTACCEST: gi|125221275|gb|EL235360.1|EL235360
genomic: GTGCAAAATCAGTCTTCAAAGCGTGGGAACAGCGATTACACTCTTCTGGGgtaactttat ... ttgcctacagGAGCATTTGGAGAGCAATGAGGGAGACCCTGAATTGCTTGTTTTTGTACC
EST: TCTTCAAAGCGTGGGAACAGCGATTACACTCTTCTGGG GAGCATTTGGAGAGCAATGAGGGAGACCCTGAATTGCTTGTTTTTGTACC
genomic: TCTTCAAAGCGTGGGAACAGCGATTACACTCTTCTGGGgtaactttat ... ttgcctacagGAGCATTTGGAGAGCAATGAGGGAGACCCTGAATTGCTTGTTTTTGTACC
tgcatgataatgtctaagtaaatagtttttttctttttttttttcttgcctacagGAGCATTTGGAGAGCAATGAGGGAGACCCTGAATTGCTTGTTTTTGTACC
tagtttttttcttttt CT-rich tract
ataatgtctaagtaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaactttatgttttacataaccaatattatgcttggctgctgaatgatcctttattatatctatccttactcaaatactatgtttatacgcagtgaaattatatatagctatgtgcatgataatgtctaagtaaatagtttttttctttttttttttcttgcctacagGAGCATTTGGAGAGCAATGAGGGAGACCCTGAATTGCTTGTTTTTGTACC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA