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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatatttattcaaatcttgattcataacctgtgtggccacttggattcttaaacttcggccccagtgccttatccgtggtggacccacggattagtctgggacctagacacggaggccacatgattcatctttttcttaaaattgttattagagtttgattgtttttctttatattgttgcagATTGTTAGTTGGTTTATCTTGCCATCAATCAGAAGCTCTCACTCAGATCATACCACAAATGCTCTTGTGCTCATCGTTCTTGTTCAATACATTCCTCGCC

Basic information

species Arabidopsis thaliana
transcript AT2G24610.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19875191|gb|AU236022.1|AU236022
EST:     GAGATCAGATTTCATCGNTGACCTCATCGCTTGTTTGGCCTCTTCCTCAG                         ATTGTTAGTTGGNTTATCCTGCCATCAATCA
genomic: GAGATCAGATTTCATCGTTGACCTCATCGCTTGTTTG-CCTCTTCCTCAGgtatatttat ... attgttgcagATTGTTAGTTGGTTTATCTTGCCATCAATCA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tctttttcttaaaattgttattagagtttgattgtttttctttatattgttgcagATTGTTAGTTGGTTTATCTTGCCATCAATCAGAAGCTCTCACTCAGATCATACCACAAATGCTCTTGTGCTCATCGTTCTTGTTCAATACATTCCTCGCC
                         gtttgat  putative branch site (score: 5)
                                  tttttctttatatt  putative PPT
                          tttgattgtttttctt  TA-rich tract