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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgtttccttcactgtgattttgaaatgattttgtatggaatccagttttgatttagttcaaagttttgattttttgattgattcgagtttgaagttttgatcttttggtgacgattatgcagATCTCGTTCACTGCGAAGGAGATCGATGTAATTGAATGGAAAGGAGACATACTCGTAGTTGGTGTGACAGAGAAGGACTTAGCCAAAGACGGTAACTCAA

Basic information

species Arabidopsis thaliana
transcript AT2G24200.2
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116437336|gb|EG479928.1|EG479928
EST:     TGGCTCACACTCTCGGTCCCACTCAACCCAACTCCACTGAGCCTCACAAG                         ATCTCGTTCACTGCGAAGGAGATCGATGTAATTGAATGGAAAGGAGACATA
genomic: TGGCTCACACTCTCGGTCTCACTCAACCCAACTCCACTGAGCCTCACAAGgtttgtttcc ... gattatgcagATCTCGTTCACTGCGAAGGAGATCGATGTAATTGAATGGAAAGGAGACATA
EST: gi|116409480|gb|EG452072.1|EG452072
EST:     TGGCTCACACTCCCGGTCTCACTCAACCCAACTCCACTGAGCCTCACAAG                         ATCTCGTTCACTGCGAAGGAGATCGATGTAATTGAATGGAAAGGAGACATA
genomic: TGGCTCACACTCTCGGTCTCACTCAACCCAACTCCACTGAGCCTCACAAGgtttgtttcc ... gattatgcagATCTCGTTCACTGCGAAGGAGATCGATGTAATTGAATGGAAAGGAGACATA
EST: gi|116409617|gb|EG452209.1|EG452209
EST:     TGGCTCACACTCTCGGTCTCACTCAACCCAACTCCACTGAGCCTCACAAG                         ATCTCGTTCACTGCGAAGGAGATCGATGTAATTGAATGGAAAGGAGACATA
genomic: TGGCTCACACTCTCGGTCTCACTCAACCCAACTCCACTGAGCCTCACAAGgtttgtttcc ... gattatgcagATCTCGTTCACTGCGAAGGAGATCGATGTAATTGAATGGAAAGGAGACATA
EST: gi|116409487|gb|EG452079.1|EG452079
EST:     TGGCTCACACTCTCGGTCTCACTCAACCCAACTCCACTGAGCCTCACAAG                         ATCTCGTTCACTGCGAAGGAGATCGATGTAATTGAATGGAAAGGAGACATA
genomic: TGGCTCACACTCTCGGTCTCACTCAACCCAACTCCACTGAGCCTCACAAGgtttgtttcc ... gattatgcagATCTCGTTCACTGCGAAGGAGATCGATGTAATTGAATGGAAAGGAGACATA
EST: gi|47830794|gb|CK120478.1|CK120478
EST:     TGGCTCACACTCTCGGTCTCACTCAACCCAACTCCACTGAGCCTCACAAG                         ATCTCGTTCACTGCGAAGGAGATCGATGTAATTGAATGGAAAGGAGACATA
genomic: TGGCTCACACTCTCGGTCTCACTCAACCCAACTCCACTGAGCCTCACAAGgtttgtttcc ... gattatgcagATCTCGTTCACTGCGAAGGAGATCGATGTAATTGAATGGAAAGGAGACATA
EST: gi|47828107|gb|CK117791.1|CK117791
EST:     TGGCTCACACTCTCGGTCTCACTCAACCCAACTCCACTGAGCCTCACAAG                         ATCTCGTTCACTGCGAAGGAGATCGATGTAATTGAATGGAAAGGAGACATA
genomic: TGGCTCACACTCTCGGTCTCACTCAACCCAACTCCACTGAGCCTCACAAGgtttgtttcc ... gattatgcagATCTCGTTCACTGCGAAGGAGATCGATGTAATTGAATGGAAAGGAGACATA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gattttttgattgattcgagtttgaagttttgatcttttggtgacgattatgcagATCTCGTTCACTGCGAAGGAGATCGATGTAATTGAATGGAAAGGAGACATACTCGTAGTTGGTGTGACAGAGAAGGACTTAGCCAAAGACGGTAACTCAA
                           ttttgat  putative branch site (score: 4)
     tttgatt  TA-rich tract