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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagatattttgatgcaatgtagaatcaagatgataattcaatatttgaattttatttatacttttatatcataatgtttttcgtatttcagtctggagtattgttctgttttacttaaaaatgggctttttttagGGGACATTTTAACCTAAGTAATTTCGAAGATGGTGTATTGTCATCTTCATTTATGGTTGGACTTCTTATTGCATCACCAATCTTTGCTTCATTGGCAAAA

Basic information

species Arabidopsis thaliana
transcript AT2G22730.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G22730.1 (Arabidopsis thaliana), 3'ss of exon 2
lower sequence: GLYMA09G33680.1 (Glycine max), 3'ss of exon 2
gtaagatattttgatgcaatgtagaatcaagatgataattcaatatttgaattttatttatacttttatatcataatgtttttcgtatttcagtctggagtattgttctgttttacttaaaaatgggctttttttagGGGACATTTTAACCTAAGTAATTTCGAAGATGGTGTATTGTCATCTTCATTTATGGTTGGACTTCTTATTGCATCACCAATCTTTGCTTCATTGGCAAAA
                                                          ||  |  |  |      |     |     ||| | | | |  | ||||| |  | |  ||     | | | | ||| |||||  |||||||| | |  |||||  ||||||| ||  |||||||| ||||||||||||||||||| ||||| || ||||| ||||||||  |||| |||
---------------------------------------------------------gtaagccctgcttctgctaaaccctct---ttttattattggttgttgttgtcatcttattg----tagccatatttcagGGGGGATTTTAACTTGAACAATTTTCAAGATGGAGTTCTGTCATCTGCATTTATGGTTGGACTTCTAATTGCTTCCCCAATATTTGCTTCTCTGGCCAAA

upper sequence: AT2G22730.1 (Arabidopsis thaliana), 3'ss of exon 2
lower sequence: Vv07s0205g00120.t01 (Vitis vinifera), 3'ss of exon 2
gtaagatattttgatgcaatgtagaatcaagatgataattcaatatttgaattttatttatacttttatatcataatgtttttcgtatttcagtctggagtattgttctgttttacttaaaaatgggctttttttagGGGACATTTTAACCTAAGTAATTTCGAAGATGGTGTATTGTCATCTTCATTTATGGTTGGACTTCTTATTGCATCACCAATCTTTGCTTCATTGGCAAAA
                                  | | ||   | | |  |||| |     |    | ||| |||   |||||| | ||    ||| |  | |  || |  ||    ||  | ||   |  ||  |||||  |||||||  | || || ||| | |||||||| || |||||| |||| ||||||||||||||| | || || ||||| ||||| || |||||||| 
----------------------------------aaatttggctgtatacatttaagcagaaaacatttat-atagcatttttctttttaatttcttggttttcattgtccttatgatattattg--ttgcttgcagGGGGGATTTTAATTTGAGCAACTTCCAGGATGGTGTTTTATCATCTGCATTCATGGTTGGACTTCTTGTAGCTTCTCCAATATTTGCATCCTTGGCAAAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcgtatttcagtctggagtattgttctgttttacttaaaaatgggctttttttagGGGACATTTTAACCTAAGTAATTTCGAAGATGGTGTATTGTCATCTTCATTTATGGTTGGACTTCTTATTGCATCACCAATCTTTGCTTCATTGGCAAAA
                                             cttttttt  CT-rich tract
                          tgttttacttaaaaat  TA-rich tract