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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgatttttaagtctctggattgcattcagttctgtggctttaagcctttcaagtattttgatttgttcacattgcacatcttaagattagtcttcgtagaatgaagtttgtattatgtgatttctacactgagagttttatatatgaaatagcattaaaggttttccttttcacaacttttacagTTCCAGTAGCCAAGTAAATTGTTTGGGAGCTTCAAAGTCGAGTATGTTCTCACATGGGTCATTGCCCTTCTTGTCCATGACGGGAATGTCCAGAAATATG

Basic information

species Arabidopsis thaliana
transcript AT2G22360.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19877504|gb|AU238335.1|AU238335
EST:     GCAGTCAGAGCTTATTATCCCAGCAGAATCGAATCAACTCGCCATCAAAA                         TTCCAGTAGCCAAGTAAATTGTTTGGGAGCTTCAAAGTCGAGTATGTTCTC
genomic: GCAGTCAGAGCTTATTATCCCAGCAGAATCGAATCAACTCGCCATCAAAAgtatgatttt ... acttttacagTTCCAGTAGCCAAGTAAATTGTTTGGGAGCTTCAAAGTCGAGTATGTTCTC
EST: gi|86036066|gb|DR331819.1|DR331819
EST:     GCAGTCAGAGCTTATTATCCCAGCAGAATCGAATCAACTCGCCATCAAAA                         TTCCAGTAGCCAAGTAAATTGTTTGGGAGCTTCAAAGTCGAGTATGTTCTC
genomic: GCAGTCAGAGCTTATTATCCCAGCAGAATCGAATCAACTCGCCATCAAAAgtatgatttt ... acttttacagTTCCAGTAGCCAAGTAAATTGTTTGGGAGCTTCAAAGTCGAGTATGTTCTC
EST: gi|124858921|gb|EH943358.1|EH943358
EST:     CTTATTATCCCAGCAGAATCGAATCAACTCGCCATCAAAA                         TTCCAGTAGCCAAGTAAATTGTTTGGGAGCTTCAAAGTCGAGTATGTTCTC
genomic: CTTATTATCCCAGCAGAATCGAATCAACTCGCCATCAAAAgtatgatttt ... acttttacagTTCCAGTAGCCAAGTAAATTGTTTGGGAGCTTCAAAGTCGAGTATGTTCTC
EST: gi|86036067|gb|DR331820.1|DR331820
EST:     GCAGTCAGAGCTTATTATCCCAGCAGAATCGAATCAACTCGCCATCAAAA                         TTCCAGTAGCCAAGTAAATTGTTTGGGAGCTTCAAAGTCGAGTATGTTCTC
genomic: GCAGTCAGAGCTTATTATCCCAGCAGAATCGAATCAACTCGCCATCAAAAgtatgatttt ... acttttacagTTCCAGTAGCCAAGTAAATTGTTTGGGAGCTTCAAAGTCGAGTATGTTCTC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gagagttttatatatgaaatagcattaaaggttttccttttcacaacttttacagTTCCAGTAGCCAAGTAAATTGTTTGGGAGCTTCAAAGTCGAGTATGTTCTCACATGGGTCATTGCCCTTCTTGTCCATGACGGGAATGTCCAGAAATATG
                                              cttttac  CT-rich tract
     ttttatatatgaaata  TA-rich tract