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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgtatatcgatctctctatctaagcttatccttacgatttgttaaaaccatcgattagtcgattagtcagtaagagtgaagaagtgatgtgtcttttttttcttgtatcagACATCACTGCGGGAGCTGACAACTCTCGGTATCAAGAATGCAGAGACTCTGGCCATCCCTAGTGTCAGGAACGAT

Basic information

species Arabidopsis thaliana
transcript AT2G21960.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G21960.1 (Arabidopsis thaliana), 3'ss of exon 2
lower sequence: GLYMA08G14970.1 (Glycine max), 3'ss of exon 2
---------------------------------------------------------------gtgtatatcgatctctctatctaagcttatccttacgatttgttaaaaccatcgattagtcgattagtcagtaagagtgaagaagtgatgtgtcttttttttcttgtatcagACATCACTGCGGGAGCTGACAACTCTCGGTATCAAGAATGCAGAGACTCTGGCCATCCCTAGTGTCAGGAACGAT
                                                                || | || |    |   || ||  | | ||| | |   ||     |    |  |   ||    || |   | |     |  |  |        |    |||  |||| ||||||||||| ||||||||||||| ||| || || || || ||||||| ||| || || ||||||||||| ||||||
gtcagtctccaattacaaatgtggcaaagtgacaactaaacattaagctctcatcaaccattcttggacatggcatccatcatgtatacctgtccatgc---ttccactacttcttcacatgtaagctaattcatcactcatacaagttttcaccgttcaaattttgtgtaccagACATCACTCCGGGAGCTGACAAGTCTAGGAATTAAAAACGCAGAGAATCTTGCAATTCCTAGTGTCAGAAACGAT

upper sequence: AT2G21960.1 (Arabidopsis thaliana), 3'ss of exon 2
lower sequence: GLYMA05G31720.1 (Glycine max), 3'ss of exon 2
---------------------------------------------------------------gtgtatatcgatctctctatctaagcttatccttacgatttgttaaaaccatcgattagtcgattagtcagtaagagtgaagaagtgatgtgtcttttttttcttgtatcagACATCACTGCGGGAGCTGACAACTCTCGGTATCAAGAATGCAGAGACTCTGGCCATCCCTAGTGTCAGGAACGAT
                                                                || | ||      |   || ||  | | |||  |    ||     |  |||  ||  ||  | || |   |       |  |  |        |     ||  |||||||||||||||| ||||||||||||| ||| || || || ||  ||||||  || || || ||||||||||| ||||||
gtcagtctccaattaaaaatgtggcaaagtgacaactaaacattaagctctcatcaaccattcttggacataacatccatcatgtatacctgtcc--agtgcttccactactcattcatatgtaaactaattcatcgctcatacaagttttcaccgttcaaaatttgtgtatcagACATCACTCCGGGAGCTGACAAGTCTAGGCATAAAAAACTCAGAGAACCTTGCAATTCCTAGTGTCAGAAACGAT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86072272|gb|DR368029.1|DR368029
EST:     AAGGTTGGGCTAAGAAATGGAGCTCCCAGCCGTATCTTTCGCGCCGTACG                         ACATCACTGCGGGAGCTGACAACTCTCGGTATCAAGAATGCAGAGACTCTG
genomic: AAGGTTGGGCTAAGAAATGGAGCTCCCAGCCGTATCTTTCGCGCCGTACGgtgtatatcg ... cttgtatcagACATCACTGCGGGAGCTGACAACTCTCGGTATCAAGAATGCAGAGACTCTG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agtcgattagtcagtaagagtgaagaagtgatgtgtcttttttttcttgtatcagACATCACTGCGGGAGCTGACAACTCTCGGTATCAAGAATGCAGAGACTCTGGCCATCCCTAGTGTCAGGAACGAT
                                   tcttttttttcttgta  CT-rich tract
                                     ttttttttcttgtat  TA-rich tract