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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgaggctaactatgacctattaaaatatatccgtcatgatgaaattcgattccaaagggtagtttcttctccacttataaattgctcgtcgttcttttctttcagATGATGATCCTAGTTGGATGCGGAGAGCTAGTTTTCAATCTTCGCTGTCTAAAGATGCTATTGAG

Basic information

species Arabidopsis thaliana
transcript AT2G21800.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19875084|gb|AU235915.1|AU235915
EST:     TTGGAAGAAACCTTGTAGATTGGAATTTGGATCCAGTGATGCTAATTCTG                         ATGATGATCCTAGTTGGATGCNGAGAGCTAGNTTTCAATC
genomic: TTGGAAGAAACCTTGTAGATTGGAATTTGGATCCAGTGATGCTAATTCTGgtgaggctaa ... tttctttcagATGATGATCCTAGTTGGATGCGGAGAGCTAGTTTTCAATC
EST: gi|86072924|gb|DR368681.1|DR368681
EST:     TTGGAAGAAACCTTGCAGATTGGAATTTGGATCCAGTGATGCTAATTCTG                         ATGATGATCCTAGTTGGATGCGGAGAGCTA
genomic: TTGGAAGAAACCTTGTAGATTGGAATTTGGATCCAGTGATGCTAATTCTGgtgaggctaa ... tttctttcagATGATGATCCTAGTTGGATGCGGAGAGCTA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tccaaagggtagtttcttctccacttataaattgctcgtcgttcttttctttcagATGATGATCCTAGTTGGATGCGGAGAGCTAGTTTTCAATCTTCGCTGTCTAAAGATGCTATTGAG
                               ttgctcgtcgttcttt  CT-rich tract
                      acttataaatt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtgaggctaactatgacctattaaaatatatccgtcatgatgaaattcgattccaaagggtagtttcttctccacttataaattgctcgtcgttcttttctttcagATGATGATCCTAGTTGGATGCGGAGAGCTAGTTTTCAATCTTCGCTGTCTAAAGATGCTATTGAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGATG