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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgattctgtggaaatatctgtcattgttagtactgtctttcttgttttgtagctatctcttttatttaatatgtgcatctctagGTAGGCATTGCTGAGCTCAAAGTTGCAGTTGAGCAGACTGGTGGATTTGTCGTGCTTGCTGAAAGTTTTGGCCACTCAGTATTTAGAGATTCTCTCAAAC

Basic information

species Arabidopsis thaliana
transcript AT2G21630.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G21630.1 (Arabidopsis thaliana), 3'ss of exon 2
lower sequence: Vv15s0045g00540.t01 (Vitis vinifera), 3'ss of exon 3
-----------gtg-attctgtggaaatatctgtca-ttgttagtactgtctttc-ttgttttgtagctatctcttttat-ttaatatgtgcatctctagGTAGGCATTGCTGAGCTCAAAGTTGCAGTTGAGCAGACTGGTGGATTTGTCGTGCTTGCTGAAAGTTTTGGCCACTCAGTATTTAGAGATTCTCTCAAAC
           ||| |||   |   || |||| |   ||     |  ||     |  || |||  |   || | ||  ||  |  | | |  || || |||| ||  ||||||| || ||| |||||||||||   ||||| ||| |||| |||||||||||||||||||||||  |||| ||||| || ||||| ||||
ggcatgcggaggtggatttaatattaagatctatggcttacgcttgttgatggacactggttttgaaagatgttttgcatgcttttttctttatttccagGTGGGGGTTGCTGAACTTAAAATTGCAGTTGAGAGAACTGGAGGAATTGTTGTGCTTGCTGAAAGTTTTGGCCATGCAGTTTTTAGGGACTCTCTTAAAC


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtactgtctttcttgttttgtagctatctcttttatttaatatgtgcatctctagGTAGGCATTGCTGAGCTCAAAGTTGCAGTTGAGCAGACTGGTGGATTTGTCGTGCTTGCTGAAAGTTTTGGCCACTCAGTATTTAGAGATTCTCTCAAAC
                                  atttaat  putative branch site (score: 4)
                                              catctct  putative PPT
                        tatctcttttatttaa  TA-rich tract