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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...cagtttttgtcttgctttgtgtgttatgttgtattcttcatgtgtttggtgcttaattgttttcttttttcaatgaaatgtttgttaaacaaaacagaagTGGAGCAAGGGAAAGCAAAAGGAGAAGGTGAACAACATGGTGTTGTTTGATCAAGGCACTTATGACAAGCTTCTCACTGAAGCTCCCAAGTTCAAGCTCA

Basic information

species Arabidopsis thaliana
transcript AT2G21580.2
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86036273|gb|DR332026.1|DR332026
EST:     CACCGTCATCAAAGCCGGCCAAATCTGGAGGTGGAAAACAGAAGAAGAAG                         A
genomic: CACCGTCATCAAAGCCGGCCAAATCTGGAGGTGGAAAACAGAAGAAGAAGgtccgttttc ... aaaacagaag-
EST: gi|86036273|gb|DR332026.1|DR332026
EST:     CACCGTCATCAAAGCCGGCCAAATCTGGAGGTGGAAAACAGAAGAAGAAG                         A
genomic: CACCGTCATCAAAGCCGGCCAAATCTGGAGGTGGAAAACAGAAGAAGAAGgtccgttttc ... aaaacagaag-
EST: gi|86036273|gb|DR332026.1|DR332026
EST:     CACCGTCATCAAAGCCGGCCAAATCTGGAGGTGGAAAACAGAAGAAGAAG                         A
genomic: CACCGTCATCAAAGCCGGCCAAATCTGGAGGTGGAAAACAGAAGAAGAAGgtccgttttc ... aaaacagaag-
EST: gi|86036273|gb|DR332026.1|DR332026
EST:     CACCGTCATCAAAGCCGGCCAAATCTGGAGGTGGAAAACAGAAGAAGAAG                         A
genomic: CACCGTCATCAAAGCCGGCCAAATCTGGAGGTGGAAAACAGAAGAAGAAGgtccgttttc ... aaaacagaag-
EST: gi|86036254|gb|DR332007.1|DR332007
EST:     CACCGTCATCAAAGCCGGCCAAATCTGGAGGTGGAAAACAGAAGAAGAAG                         A
genomic: CACCGTCATCAAAGCCGGCCAAATCTGGAGGTGGAAAACAGAAGAAGAAGgtccgttttc ... aaaacagaag-
EST: gi|86036254|gb|DR332007.1|DR332007
EST:     CACCGTCATCAAAGCCGGCCAAATCTGGAGGTGGAAAACAGAAGAAGAAG                         A
genomic: CACCGTCATCAAAGCCGGCCAAATCTGGAGGTGGAAAACAGAAGAAGAAGgtccgttttc ... aaaacagaag-
EST: gi|86036254|gb|DR332007.1|DR332007
EST:     CACCGTCATCAAAGCCGGCCAAATCTGGAGGTGGAAAACAGAAGAAGAAG                         A
genomic: CACCGTCATCAAAGCCGGCCAAATCTGGAGGTGGAAAACAGAAGAAGAAGgtccgttttc ... aaaacagaag-
EST: gi|86036254|gb|DR332007.1|DR332007
EST:     CACCGTCATCAAAGCCGGCCAAATCTGGAGGTGGAAAACAGAAGAAGAAG                         A
genomic: CACCGTCATCAAAGCCGGCCAAATCTGGAGGTGGAAAACAGAAGAAGAAGgtccgttttc ... aaaacagaag-
EST: gi|86036287|gb|DR332040.1|DR332040
EST:     CACCGTCATCAAAGCCGGCCAAATCTGGAGGTGGAAAACAGAAGAAGAAG                         A
genomic: CACCGTCATCAAAGCCGGCCAAATCTGGAGGTGGAAAACAGAAGAAGAAGgtccgttttc ... aaaacagaag-
EST: gi|86036287|gb|DR332040.1|DR332040
EST:     CACCGTCATCAAAGCCGGCCAAATCTGGAGGTGGAAAACAGAAGAAGAAG                         A
genomic: CACCGTCATCAAAGCCGGCCAAATCTGGAGGTGGAAAACAGAAGAAGAAGgtccgttttc ... aaaacagaag-
EST: gi|86036287|gb|DR332040.1|DR332040
EST:     CACCGTCATCAAAGCCGGCCAAATCTGGAGGTGGAAAACAGAAGAAGAAG                         A
genomic: CACCGTCATCAAAGCCGGCCAAATCTGGAGGTGGAAAACAGAAGAAGAAGgtccgttttc ... aaaacagaag-
EST: gi|86036287|gb|DR332040.1|DR332040
EST:     CACCGTCATCAAAGCCGGCCAAATCTGGAGGTGGAAAACAGAAGAAGAAG                         A
genomic: CACCGTCATCAAAGCCGGCCAAATCTGGAGGTGGAAAACAGAAGAAGAAGgtccgttttc ... aaaacagaag-
EST: gi|86036277|gb|DR332030.1|DR332030
EST:     CACCGTCATCAAAGCCGGCCAAATCTGGAGGTGGAAAACAGAAGAAGAAG                         A
genomic: CACCGTCATCAAAGCCGGCCAAATCTGGAGGTGGAAAACAGAAGAAGAAGgtccgttttc ... aaaacagaag-
EST: gi|86036277|gb|DR332030.1|DR332030
EST:     CACCGTCATCAAAGCCGGCCAAATCTGGAGGTGGAAAACAGAAGAAGAAG                         A
genomic: CACCGTCATCAAAGCCGGCCAAATCTGGAGGTGGAAAACAGAAGAAGAAGgtccgttttc ... aaaacagaag-
EST: gi|86036277|gb|DR332030.1|DR332030
EST:     CACCGTCATCAAAGCCGGCCAAATCTGGAGGTGGAAAACAGAAGAAGAAG                         A
genomic: CACCGTCATCAAAGCCGGCCAAATCTGGAGGTGGAAAACAGAAGAAGAAGgtccgttttc ... aaaacagaag-
EST: gi|86036277|gb|DR332030.1|DR332030
EST:     CACCGTCATCAAAGCCGGCCAAATCTGGAGGTGGAAAACAGAAGAAGAAG                         A
genomic: CACCGTCATCAAAGCCGGCCAAATCTGGAGGTGGAAAACAGAAGAAGAAGgtccgttttc ... aaaacagaag-
EST: gi|86036278|gb|DR332031.1|DR332031
EST:     CACCGTCATCAAAGCCGGCCAAATCTGGAGGTGGAAAACAGAAGAAGAAG                         A
genomic: CACCGTCATCAAAGCCGGCCAAATCTGGAGGTGGAAAACAGAAGAAGAAGgtccgttttc ... aaaacagaag-
EST: gi|86036278|gb|DR332031.1|DR332031
EST:     CACCGTCATCAAAGCCGGCCAAATCTGGAGGTGGAAAACAGAAGAAGAAG                         A
genomic: CACCGTCATCAAAGCCGGCCAAATCTGGAGGTGGAAAACAGAAGAAGAAGgtccgttttc ... aaaacagaag-
EST: gi|86036278|gb|DR332031.1|DR332031
EST:     CACCGTCATCAAAGCCGGCCAAATCTGGAGGTGGAAAACAGAAGAAGAAG                         A
genomic: CACCGTCATCAAAGCCGGCCAAATCTGGAGGTGGAAAACAGAAGAAGAAGgtccgttttc ... aaaacagaag-
EST: gi|86036278|gb|DR332031.1|DR332031
EST:     CACCGTCATCAAAGCCGGCCAAATCTGGAGGTGGAAAACAGAAGAAGAAG                         A
genomic: CACCGTCATCAAAGCCGGCCAAATCTGGAGGTGGAAAACAGAAGAAGAAGgtccgttttc ... aaaacagaag-
EST: gi|86036231|gb|DR331984.1|DR331984
EST:     CACCGTCATCAAAGCCGGCCAAATCTGGAGGTGGAAAACAGAAGAAGAAG                         A
genomic: CACCGTCATCAAAGCCGGCCAAATCTGGAGGTGGAAAACAGAAGAAGAAGgtccgttttc ... aaaacagaag-
EST: gi|86036231|gb|DR331984.1|DR331984
EST:     CACCGTCATCAAAGCCGGCCAAATCTGGAGGTGGAAAACAGAAGAAGAAG                         A
genomic: CACCGTCATCAAAGCCGGCCAAATCTGGAGGTGGAAAACAGAAGAAGAAGgtccgttttc ... aaaacagaag-
EST: gi|86036231|gb|DR331984.1|DR331984
EST:     CACCGTCATCAAAGCCGGCCAAATCTGGAGGTGGAAAACAGAAGAAGAAG                         A
genomic: CACCGTCATCAAAGCCGGCCAAATCTGGAGGTGGAAAACAGAAGAAGAAGgtccgttttc ... aaaacagaag-
EST: gi|86036231|gb|DR331984.1|DR331984
EST:     CACCGTCATCAAAGCCGGCCAAATCTGGAGGTGGAAAACAGAAGAAGAAG                         A
genomic: CACCGTCATCAAAGCCGGCCAAATCTGGAGGTGGAAAACAGAAGAAGAAGgtccgttttc ... aaaacagaag-
EST: gi|86036238|gb|DR331991.1|DR331991
EST:     CACCGTCATCAAAGCCGGCCAAATCTGGAGGTGGAAAACAGAAGAAGAAG                         A
genomic: CACCGTCATCAAAGCCGGCCAAATCTGGAGGTGGAAAACAGAAGAAGAAGgtccgttttc ... aaaacagaag-
EST: gi|86036238|gb|DR331991.1|DR331991
EST:     CACCGTCATCAAAGCCGGCCAAATCTGGAGGTGGAAAACAGAAGAAGAAG                         A
genomic: CACCGTCATCAAAGCCGGCCAAATCTGGAGGTGGAAAACAGAAGAAGAAGgtccgttttc ... aaaacagaag-
EST: gi|86036238|gb|DR331991.1|DR331991
EST:     CACCGTCATCAAAGCCGGCCAAATCTGGAGGTGGAAAACAGAAGAAGAAG                         A
genomic: CACCGTCATCAAAGCCGGCCAAATCTGGAGGTGGAAAACAGAAGAAGAAGgtccgttttc ... aaaacagaag-
EST: gi|86036238|gb|DR331991.1|DR331991
EST:     CACCGTCATCAAAGCCGGCCAAATCTGGAGGTGGAAAACAGAAGAAGAAG                         A
genomic: CACCGTCATCAAAGCCGGCCAAATCTGGAGGTGGAAAACAGAAGAAGAAGgtccgttttc ... aaaacagaag-
EST: gi|86036244|gb|DR331997.1|DR331997
EST:     CACCGTCATCAAAGCCGGCCAAATCTGGAGGTGGAAAACAGAAGAAGAAG                         A
genomic: CACCGTCATCAAAGCCGGCCAAATCTGGAGGTGGAAAACAGAAGAAGAAGgtccgttttc ... aaaacagaag-
EST: gi|86036244|gb|DR331997.1|DR331997
EST:     CACCGTCATCAAAGCCGGCCAAATCTGGAGGTGGAAAACAGAAGAAGAAG                         A
genomic: CACCGTCATCAAAGCCGGCCAAATCTGGAGGTGGAAAACAGAAGAAGAAGgtccgttttc ... aaaacagaag-
EST: gi|86036244|gb|DR331997.1|DR331997
EST:     CACCGTCATCAAAGCCGGCCAAATCTGGAGGTGGAAAACAGAAGAAGAAG                         A
genomic: CACCGTCATCAAAGCCGGCCAAATCTGGAGGTGGAAAACAGAAGAAGAAGgtccgttttc ... aaaacagaag-
EST: gi|86036244|gb|DR331997.1|DR331997
EST:     CACCGTCATCAAAGCCGGCCAAATCTGGAGGTGGAAAACAGAAGAAGAAG                         A
genomic: CACCGTCATCAAAGCCGGCCAAATCTGGAGGTGGAAAACAGAAGAAGAAGgtccgttttc ... aaaacagaag-
EST: gi|152034092|gb|BP867368.2|BP867368
EST:     CGTCATCAAAGCCGGCCAAATCTGGAGGTGGAAAACAGAAGAAGAAGAAG                         TGGAGCAAGGGAAAGCAAAAGGAGAAGGTGAACAACATGGTGTTGTTTGAT
genomic: CGTCATCAAAGCCGGCCAAATCTGGAGGTGGAAAAC---AGAAGAAGAAGgtccgttttc ... aaaacagaagTGGAGCAAGGGAAAGCAAAAGGAGAAGGTGAACAACATGGTGTTGTTTGAT
EST: gi|86036295|gb|DR332048.1|DR332048
EST:     CACCGTCATCAAAGCCGGCCAAATCTGGAGGTGGAAAACAGAAGAAGAAG                         A
genomic: CACCGTCATCAAAGCCGGCCAAATCTGGAGGTGGAAAACAGAAGAAGAAGgtccgttttc ... aaaacagaag-
EST: gi|86036295|gb|DR332048.1|DR332048
EST:     CACCGTCATCAAAGCCGGCCAAATCTGGAGGTGGAAAACAGAAGAAGAAG                         A
genomic: CACCGTCATCAAAGCCGGCCAAATCTGGAGGTGGAAAACAGAAGAAGAAGgtccgttttc ... aaaacagaag-
EST: gi|86036295|gb|DR332048.1|DR332048
EST:     CACCGTCATCAAAGCCGGCCAAATCTGGAGGTGGAAAACAGAAGAAGAAG                         A
genomic: CACCGTCATCAAAGCCGGCCAAATCTGGAGGTGGAAAACAGAAGAAGAAGgtccgttttc ... aaaacagaag-
EST: gi|86036295|gb|DR332048.1|DR332048
EST:     CACCGTCATCAAAGCCGGCCAAATCTGGAGGTGGAAAACAGAAGAAGAAG                         A
genomic: CACCGTCATCAAAGCCGGCCAAATCTGGAGGTGGAAAACAGAAGAAGAAGgtccgttttc ... aaaacagaag-
EST: gi|86036284|gb|DR332037.1|DR332037
EST:     CACCGTCATCAAAGCCGGCCAAATCTGGAGGTGGAAAACAGAAGAAGAAG                         A
genomic: CACCGTCATCAAAGCCGGCCAAATCTGGAGGTGGAAAACAGAAGAAGAAGgtccgttttc ... aaaacagaag-
EST: gi|86036284|gb|DR332037.1|DR332037
EST:     CACCGTCATCAAAGCCGGCCAAATCTGGAGGTGGAAAACAGAAGAAGAAG                         A
genomic: CACCGTCATCAAAGCCGGCCAAATCTGGAGGTGGAAAACAGAAGAAGAAGgtccgttttc ... aaaacagaag-
EST: gi|86036284|gb|DR332037.1|DR332037
EST:     CACCGTCATCAAAGCCGGCCAAATCTGGAGGTGGAAAACAGAAGAAGAAG                         A
genomic: CACCGTCATCAAAGCCGGCCAAATCTGGAGGTGGAAAACAGAAGAAGAAGgtccgttttc ... aaaacagaag-
EST: gi|86036284|gb|DR332037.1|DR332037
EST:     CACCGTCATCAAAGCCGGCCAAATCTGGAGGTGGAAAACAGAAGAAGAAG                         A
genomic: CACCGTCATCAAAGCCGGCCAAATCTGGAGGTGGAAAACAGAAGAAGAAGgtccgttttc ... aaaacagaag-
EST: gi|86036251|gb|DR332004.1|DR332004
EST:     CACCGTCATCAAAGCCGGCCAAATCTGGAGGTGGAAAACAGAAGAAGAAG                         A
genomic: CACCGTCATCAAAGCCGGCCAAATCTGGAGGTGGAAAACAGAAGAAGAAGgtccgttttc ... aaaacagaag-
EST: gi|86036251|gb|DR332004.1|DR332004
EST:     CACCGTCATCAAAGCCGGCCAAATCTGGAGGTGGAAAACAGAAGAAGAAG                         A
genomic: CACCGTCATCAAAGCCGGCCAAATCTGGAGGTGGAAAACAGAAGAAGAAGgtccgttttc ... aaaacagaag-
EST: gi|86036251|gb|DR332004.1|DR332004
EST:     CACCGTCATCAAAGCCGGCCAAATCTGGAGGTGGAAAACAGAAGAAGAAG                         A
genomic: CACCGTCATCAAAGCCGGCCAAATCTGGAGGTGGAAAACAGAAGAAGAAGgtccgttttc ... aaaacagaag-
EST: gi|86036251|gb|DR332004.1|DR332004
EST:     CACCGTCATCAAAGCCGGCCAAATCTGGAGGTGGAAAACAGAAGAAGAAG                         A
genomic: CACCGTCATCAAAGCCGGCCAAATCTGGAGGTGGAAAACAGAAGAAGAAGgtccgttttc ... aaaacagaag-
EST: gi|86036226|gb|DR331979.1|DR331979
EST:     CACCGTCATCAAAGCCGGCCAAATCTGGAGGTGGAAAACAGAAGAAGAAG                         A
genomic: CACCGTCATCAAAGCCGGCCAAATCTGGAGGTGGAAAACAGAAGAAGAAGgtccgttttc ... aaaacagaag-
EST: gi|86036226|gb|DR331979.1|DR331979
EST:     CACCGTCATCAAAGCCGGCCAAATCTGGAGGTGGAAAACAGAAGAAGAAG                         A
genomic: CACCGTCATCAAAGCCGGCCAAATCTGGAGGTGGAAAACAGAAGAAGAAGgtccgttttc ... aaaacagaag-
EST: gi|86036226|gb|DR331979.1|DR331979
EST:     CACCGTCATCAAAGCCGGCCAAATCTGGAGGTGGAAAACAGAAGAAGAAG                         A
genomic: CACCGTCATCAAAGCCGGCCAAATCTGGAGGTGGAAAACAGAAGAAGAAGgtccgttttc ... aaaacagaag-
EST: gi|86036226|gb|DR331979.1|DR331979
EST:     CACCGTCATCAAAGCCGGCCAAATCTGGAGGTGGAAAACAGAAGAAGAAG                         A
genomic: CACCGTCATCAAAGCCGGCCAAATCTGGAGGTGGAAAACAGAAGAAGAAGgtccgttttc ... aaaacagaag-
EST: gi|116414979|gb|EG457571.1|EG457571
EST:     CGTCATCAAAGCCGGCCAAATCTGGAGGTGGAAAACAGAAGAAGAAGAAG                         TGGAGCAAGGGAAAGCAAAAGGAGAAGGTGAACAACATGGTGTTGTTTGAT
genomic: CGTCATCAAAGCCGGCCAAATCTGGAGGTGGAAAAC---AGAAGAAGAAGgtccgttttc ... aaaacagaagTGGAGCAAGGGAAAGCAAAAGGAGAAGGTGAACAACATGGTGTTGTTTGAT
EST: gi|86036270|gb|DR332023.1|DR332023
EST:     CGTCATCAAAGCCGGCCAAATCTGGAGGTGGAAAACAGAAGAAGAAGAAG                         TGGAGCAAGGGAAAGCAAAAGGAGAAGGTGAACAACATGGTGTTGTTTGAT
genomic: CGTCATCAAAGCCGGCCAAATCTGGAGGTGGAAAAC---AGAAGAAGAAGgtccgttttc ... aaaacagaagTGGAGCAAGGGAAAGCAAAAGGAGAAGGTGAACAACATGGTGTTGTTTGAT
EST: gi|86036230|gb|DR331983.1|DR331983
EST:     CGTCATCAAAGCCGGCCAAATCTGGAGGTGGAAAACAGAAGAAGAAGAAG                         TGGAGCAAGGGAAAGCAAAAGGAGAAGGTGAACAACATGGTGTTGTTTGAT
genomic: CGTCATCAAAGCCGGCCAAATCTGGAGGTGGAAAAC---AGAAGAAGAAGgtccgttttc ... aaaacagaagTGGAGCAAGGGAAAGCAAAAGGAGAAGGTGAACAACATGGTGTTGTTTGAT
EST: gi|86036292|gb|DR332045.1|DR332045
EST:     CACCGTCATCAAAGCCGGCCAAATCTGGAGGTGGAAAACAGAAGAAGAAG                         A
genomic: CACCGTCATCAAAGCCGGCCAAATCTGGAGGTGGAAAACAGAAGAAGAAGgtccgttttc ... aaaacagaag-
EST: gi|86036292|gb|DR332045.1|DR332045
EST:     CACCGTCATCAAAGCCGGCCAAATCTGGAGGTGGAAAACAGAAGAAGAAG                         A
genomic: CACCGTCATCAAAGCCGGCCAAATCTGGAGGTGGAAAACAGAAGAAGAAGgtccgttttc ... aaaacagaag-
EST: gi|86036292|gb|DR332045.1|DR332045
EST:     CACCGTCATCAAAGCCGGCCAAATCTGGAGGTGGAAAACAGAAGAAGAAG                         A
genomic: CACCGTCATCAAAGCCGGCCAAATCTGGAGGTGGAAAACAGAAGAAGAAGgtccgttttc ... aaaacagaag-
EST: gi|86036292|gb|DR332045.1|DR332045
EST:     CACCGTCATCAAAGCCGGCCAAATCTGGAGGTGGAAAACAGAAGAAGAAG                         A
genomic: CACCGTCATCAAAGCCGGCCAAATCTGGAGGTGGAAAACAGAAGAAGAAGgtccgttttc ... aaaacagaag-
EST: gi|86036293|gb|DR332046.1|DR332046
EST:     CACCGTCATCAAAGCCGGCCAAATCTGGAGGTGGAAAACAGAAGAAGAAG                         A
genomic: CACCGTCATCAAAGCCGGCCAAATCTGGAGGTGGAAAACAGAAGAAGAAGgtccgttttc ... aaaacagaag-
EST: gi|86036293|gb|DR332046.1|DR332046
EST:     CACCGTCATCAAAGCCGGCCAAATCTGGAGGTGGAAAACAGAAGAAGAAG                         A
genomic: CACCGTCATCAAAGCCGGCCAAATCTGGAGGTGGAAAACAGAAGAAGAAGgtccgttttc ... aaaacagaag-
EST: gi|86036293|gb|DR332046.1|DR332046
EST:     CACCGTCATCAAAGCCGGCCAAATCTGGAGGTGGAAAACAGAAGAAGAAG                         A
genomic: CACCGTCATCAAAGCCGGCCAAATCTGGAGGTGGAAAACAGAAGAAGAAGgtccgttttc ... aaaacagaag-
EST: gi|86036293|gb|DR332046.1|DR332046
EST:     CACCGTCATCAAAGCCGGCCAAATCTGGAGGTGGAAAACAGAAGAAGAAG                         A
genomic: CACCGTCATCAAAGCCGGCCAAATCTGGAGGTGGAAAACAGAAGAAGAAGgtccgttttc ... aaaacagaag-
EST: gi|86036228|gb|DR331981.1|DR331981
EST:     CACCGTCATCAAAGCCGGCCAAATCTGGAGGTGGAAAACAGAAGAAGAAG                         A
genomic: CACCGTCATCAAAGCCGGCCAAATCTGGAGGTGGAAAACAGAAGAAGAAGgtccgttttc ... aaaacagaag-
EST: gi|86036228|gb|DR331981.1|DR331981
EST:     CACCGTCATCAAAGCCGGCCAAATCTGGAGGTGGAAAACAGAAGAAGAAG                         A
genomic: CACCGTCATCAAAGCCGGCCAAATCTGGAGGTGGAAAACAGAAGAAGAAGgtccgttttc ... aaaacagaag-
EST: gi|86036228|gb|DR331981.1|DR331981
EST:     CACCGTCATCAAAGCCGGCCAAATCTGGAGGTGGAAAACAGAAGAAGAAG                         A
genomic: CACCGTCATCAAAGCCGGCCAAATCTGGAGGTGGAAAACAGAAGAAGAAGgtccgttttc ... aaaacagaag-
EST: gi|86036228|gb|DR331981.1|DR331981
EST:     CACCGTCATCAAAGCCGGCCAAATCTGGAGGTGGAAAACAGAAGAAGAAG                         A
genomic: CACCGTCATCAAAGCCGGCCAAATCTGGAGGTGGAAAACAGAAGAAGAAGgtccgttttc ... aaaacagaag-
EST: gi|86036213|gb|DR331966.1|DR331966
EST:     CACCGTCATCAAAGCCGGCCAAATCTGGAGGTGGAAAACAGAAGAAGAAG                         A
genomic: CACCGTCATCAAAGCCGGCCAAATCTGGAGGTGGAAAACAGAAGAAGAAGgtccgttttc ... aaaacagaag-
EST: gi|86036213|gb|DR331966.1|DR331966
EST:     CACCGTCATCAAAGCCGGCCAAATCTGGAGGTGGAAAACAGAAGAAGAAG                         A
genomic: CACCGTCATCAAAGCCGGCCAAATCTGGAGGTGGAAAACAGAAGAAGAAGgtccgttttc ... aaaacagaag-
EST: gi|86036213|gb|DR331966.1|DR331966
EST:     CACCGTCATCAAAGCCGGCCAAATCTGGAGGTGGAAAACAGAAGAAGAAG                         A
genomic: CACCGTCATCAAAGCCGGCCAAATCTGGAGGTGGAAAACAGAAGAAGAAGgtccgttttc ... aaaacagaag-
EST: gi|86036213|gb|DR331966.1|DR331966
EST:     CACCGTCATCAAAGCCGGCCAAATCTGGAGGTGGAAAACAGAAGAAGAAG                         A
genomic: CACCGTCATCAAAGCCGGCCAAATCTGGAGGTGGAAAACAGAAGAAGAAGgtccgttttc ... aaaacagaag-
EST: gi|86036258|gb|DR332011.1|DR332011
EST:     CACCGTCATCAAAGCCGGCCAAATCTGGAGGTGGAAAACAGAAGAAGAAG                         A
genomic: CACCGTCATCAAAGCCGGCCAAATCTGGAGGTGGAAAACAGAAGAAGAAGgtccgttttc ... aaaacagaag-
EST: gi|86036258|gb|DR332011.1|DR332011
EST:     CACCGTCATCAAAGCCGGCCAAATCTGGAGGTGGAAAACAGAAGAAGAAG                         A
genomic: CACCGTCATCAAAGCCGGCCAAATCTGGAGGTGGAAAACAGAAGAAGAAGgtccgttttc ... aaaacagaag-
EST: gi|86036258|gb|DR332011.1|DR332011
EST:     CACCGTCATCAAAGCCGGCCAAATCTGGAGGTGGAAAACAGAAGAAGAAG                         A
genomic: CACCGTCATCAAAGCCGGCCAAATCTGGAGGTGGAAAACAGAAGAAGAAGgtccgttttc ... aaaacagaag-
EST: gi|86036258|gb|DR332011.1|DR332011
EST:     CACCGTCATCAAAGCCGGCCAAATCTGGAGGTGGAAAACAGAAGAAGAAG                         A
genomic: CACCGTCATCAAAGCCGGCCAAATCTGGAGGTGGAAAACAGAAGAAGAAGgtccgttttc ... aaaacagaag-
EST: gi|86036242|gb|DR331995.1|DR331995
EST:     CACCGTCATCAAAGCCGGCCAAATCTGGAGGTGGAAAACAGAAGAAGAAG                         A
genomic: CACCGTCATCAAAGCCGGCCAAATCTGGAGGTGGAAAACAGAAGAAGAAGgtccgttttc ... aaaacagaag-
EST: gi|86036242|gb|DR331995.1|DR331995
EST:     CACCGTCATCAAAGCCGGCCAAATCTGGAGGTGGAAAACAGAAGAAGAAG                         A
genomic: CACCGTCATCAAAGCCGGCCAAATCTGGAGGTGGAAAACAGAAGAAGAAGgtccgttttc ... aaaacagaag-
EST: gi|86036242|gb|DR331995.1|DR331995
EST:     CACCGTCATCAAAGCCGGCCAAATCTGGAGGTGGAAAACAGAAGAAGAAG                         A
genomic: CACCGTCATCAAAGCCGGCCAAATCTGGAGGTGGAAAACAGAAGAAGAAGgtccgttttc ... aaaacagaag-
EST: gi|86036242|gb|DR331995.1|DR331995
EST:     CACCGTCATCAAAGCCGGCCAAATCTGGAGGTGGAAAACAGAAGAAGAAG                         A
genomic: CACCGTCATCAAAGCCGGCCAAATCTGGAGGTGGAAAACAGAAGAAGAAGgtccgttttc ... aaaacagaag-
EST: gi|86036282|gb|DR332035.1|DR332035
EST:     CACCGTCATCAAAGCCGGCCAAATCTGGAGGTGGAAAACAGAAGAAGAAG                         A
genomic: CACCGTCATCAAAGCCGGCCAAATCTGGAGGTGGAAAACAGAAGAAGAAGgtccgttttc ... aaaacagaag-
EST: gi|86036282|gb|DR332035.1|DR332035
EST:     CACCGTCATCAAAGCCGGCCAAATCTGGAGGTGGAAAACAGAAGAAGAAG                         A
genomic: CACCGTCATCAAAGCCGGCCAAATCTGGAGGTGGAAAACAGAAGAAGAAGgtccgttttc ... aaaacagaag-
EST: gi|86036282|gb|DR332035.1|DR332035
EST:     CACCGTCATCAAAGCCGGCCAAATCTGGAGGTGGAAAACAGAAGAAGAAG                         A
genomic: CACCGTCATCAAAGCCGGCCAAATCTGGAGGTGGAAAACAGAAGAAGAAGgtccgttttc ... aaaacagaag-
EST: gi|86036282|gb|DR332035.1|DR332035
EST:     CACCGTCATCAAAGCCGGCCAAATCTGGAGGTGGAAAACAGAAGAAGAAG                         A
genomic: CACCGTCATCAAAGCCGGCCAAATCTGGAGGTGGAAAACAGAAGAAGAAGgtccgttttc ... aaaacagaag-
EST: gi|86036219|gb|DR331972.1|DR331972
EST:     CACCGTCATCAAAGCCGGCCAAATCTGGAGGTGGAAAACAGAAGAAGAAG                         A
genomic: CACCGTCATCAAAGCCGGCCAAATCTGGAGGTGGAAAACAGAAGAAGAAGgtccgttttc ... aaaacagaag-
EST: gi|86036219|gb|DR331972.1|DR331972
EST:     CACCGTCATCAAAGCCGGCCAAATCTGGAGGTGGAAAACAGAAGAAGAAG                         A
genomic: CACCGTCATCAAAGCCGGCCAAATCTGGAGGTGGAAAACAGAAGAAGAAGgtccgttttc ... aaaacagaag-
EST: gi|86036219|gb|DR331972.1|DR331972
EST:     CACCGTCATCAAAGCCGGCCAAATCTGGAGGTGGAAAACAGAAGAAGAAG                         A
genomic: CACCGTCATCAAAGCCGGCCAAATCTGGAGGTGGAAAACAGAAGAAGAAGgtccgttttc ... aaaacagaag-
EST: gi|86036219|gb|DR331972.1|DR331972
EST:     CACCGTCATCAAAGCCGGCCAAATCTGGAGGTGGAAAACAGAAGAAGAAG                         A
genomic: CACCGTCATCAAAGCCGGCCAAATCTGGAGGTGGAAAACAGAAGAAGAAGgtccgttttc ... aaaacagaag-
EST: gi|86079503|gb|DR375260.1|DR375260
EST:     CACCGTCATCAAAGCCGGCCAAATCTGGAGGTGGAAAACAGAAGAAGAAG                         A
genomic: CACCGTCATCAAAGCCGGCCAAATCTGGAGGTGGAAAACAGAAGAAGAAGgtccgttttc ... aaaacagaag-
EST: gi|86079503|gb|DR375260.1|DR375260
EST:     CACCGTCATCAAAGCCGGCCAAATCTGGAGGTGGAAAACAGAAGAAGAAG                         A
genomic: CACCGTCATCAAAGCCGGCCAAATCTGGAGGTGGAAAACAGAAGAAGAAGgtccgttttc ... aaaacagaag-
EST: gi|86079503|gb|DR375260.1|DR375260
EST:     CACCGTCATCAAAGCCGGCCAAATCTGGAGGTGGAAAACAGAAGAAGAAG                         A
genomic: CACCGTCATCAAAGCCGGCCAAATCTGGAGGTGGAAAACAGAAGAAGAAGgtccgttttc ... aaaacagaag-
EST: gi|86079503|gb|DR375260.1|DR375260
EST:     CACCGTCATCAAAGCCGGCCAAATCTGGAGGTGGAAAACAGAAGAAGAAG                         A
genomic: CACCGTCATCAAAGCCGGCCAAATCTGGAGGTGGAAAACAGAAGAAGAAGgtccgttttc ... aaaacagaag-
EST: gi|86036227|gb|DR331980.1|DR331980
EST:     CACCGTCATCAAAGCCGGCCAAATCTGGAGGTGGAAAACAGAAGAAGAAG                         A
genomic: CACCGTCATCAAAGCCGGCCAAATCTGGAGGTGGAAAACAGAAGAAGAAGgtccgttttc ... aaaacagaag-
EST: gi|86036227|gb|DR331980.1|DR331980
EST:     CACCGTCATCAAAGCCGGCCAAATCTGGAGGTGGAAAACAGAAGAAGAAG                         A
genomic: CACCGTCATCAAAGCCGGCCAAATCTGGAGGTGGAAAACAGAAGAAGAAGgtccgttttc ... aaaacagaag-
EST: gi|86036227|gb|DR331980.1|DR331980
EST:     CACCGTCATCAAAGCCGGCCAAATCTGGAGGTGGAAAACAGAAGAAGAAG                         A
genomic: CACCGTCATCAAAGCCGGCCAAATCTGGAGGTGGAAAACAGAAGAAGAAGgtccgttttc ... aaaacagaag-
EST: gi|86036227|gb|DR331980.1|DR331980
EST:     CACCGTCATCAAAGCCGGCCAAATCTGGAGGTGGAAAACAGAAGAAGAAG                         A
genomic: CACCGTCATCAAAGCCGGCCAAATCTGGAGGTGGAAAACAGAAGAAGAAGgtccgttttc ... aaaacagaag-


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttggtgcttaattgttttcttttttcaatgaaatgtttgttaaacaaaacagaagTGGAGCAAGGGAAAGCAAAAGGAGAAGGTGAACAACATGGTGTTGTTTGATCAAGGCACTTATGACAAGCTTCTCACTGAAGCTCCCAAGTTCAAGCTCA
     gcttaat  putative branch site (score: 4)
       ttaattgttttctttt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
cagtttttgtcttgctttgtgtgttatgttgtattcttcatgtgtttggtgcttaattgttttcttttttcaatgaaatgtttgttaaacaaaacagaagTGGAGCAAGGGAAAGCAAAAGGAGAAGGTGAACAACATGGTGTTGTTTGATCAAGGCACTTATGACAAGCTTCTCACTGAAGCTCCCAAGTTCAAGCTCA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- gtttttg
- - - - - - - - - - - - - - - - - - - - - tgtttgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aatgaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgtttgt