1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtttttcttcttcttttattatacttcatctgcattatactagcttctttagtagttggctctatgttctcaatttggtgacaatgttgttttgtatgcagATTTTACTGTTGTAGCTCTAGAATGGGCAGAGAAGAATGTTCAAAGTAATCCCCATTTTTCAGACCTTATCGAGATCAGAGACTCTAAAGTTCCTCCACA
species | Arabidopsis thaliana |
transcript | AT2G21070.3 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TTATCCTCTCCTTGGTGCATCTCTTTTTGGTTGGAGTTTTGTTGGCTCAG ATTTTACTGTTGTAGCTCTAGAATGGGCAGAGAAGAATGTTCAAAGTAATCEST: gi|116380279|gb|EG422871.1|EG422871
genomic: TTATCCTCTCCTTGGTGCATCTCTTTTTGGTTGGAGTTTTGTTGGCTCAGgtttttcttc ... ttgtatgcagATTTTACTGTTGTAGCTCTAGAATGGGCAGAGAAGAATGTTCAAAGTAATC
EST: TTATCCTCTCCTTGGTGCATCTCTTTTTGGTTGGAGTTTTGTTGGCTCAG ATTTTACTGTTGTAGCTCTAGAATGGGCAGAGAAGAATGTTCAAAGTAATC
genomic: TTATCCTCTCCTTGGTGCATCTCTTTTTGGTTGGAGTTTTGTTGGCTCAGgtttttcttc ... ttgtatgcagATTTTACTGTTGTAGCTCTAGAATGGGCAGAGAAGAATGTTCAAAGTAATC
ctttagtagttggctctatgttctcaatttggtgacaatgttgttttgtatgcagATTTTACTGTTGTAGCTCTAGAATGGGCAGAGAAGAATGTTCAAAGTAATCCCCATTTTTCAGACCTTATCGAGATCAGAGACTCTAAAGTTCCTCCACA
ttgtttt CT-rich tract
ttttgtat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttttcttcttcttttattatacttcatctgcattatactagcttctttagtagttggctctatgttctcaatttggtgacaatgttgttttgtatgcagATTTTACTGTTGTAGCTCTAGAATGGGCAGAGAAGAATGTTCAAAGTAATCCCCATTTTTCAGACCTTATCGAGATCAGAGACTCTAAAGTTCCTCCACA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA