Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttagtatatttcttttcaatttcattctctaatattaaccatccaaattaacatgttgctgttatttggtatactagAAATATAGGTCTCATCGGAAACATTTGCTAGCTCGTGAGGCCGAAGCGGCTAATTGGACACGCAAAAGGCATATCTATGGAGTAGACACCGGTGCTAATC

Basic information

species Arabidopsis thaliana
transcript AT2G20570.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G20570.2 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: GLYMA12G13430.1 (Glycine max), 3'ss of exon 2
--------------gttagtatatttcttttcaatttcattctctaatattaaccatccaaattaacatgttgc---tgttatttggtatac-----tagAAATATAGGTCTCATCGGAAACATTTGCTAGCTCGTGAGGCCGAAGCGGCTAATTGGACACGCAAAAGGCATATCTATGG-AGTAGACACCGGTGCTAATC
               ||| | |   |   |   |  | ||||   |  |  |    |  ||   |  ||| |     |||| |||  | |        |||||||||| |||||| |||||||||||||||| ||||| || ||||| || |  ||||  |  |  |||||  | ||||   || ||     | |  |   
attaagatacttagattaatttgaattaatcataaataattccaaagaagcatttttttaagggaggatgctaaatatgttgttttatgtttgaatgcagAAATATAGATCTCATAGGAAACATTTGCTAGCACGTGAAGCTGAAGCAGCAAGCTGGAGTCAAAGGAGGCAATTGTATGCTGGTGGAGGGAAGAGAGAGG-

upper sequence: AT2G20570.2 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: GLYMA06G44330.1 (Glycine max), 3'ss of exon 2
--------------------gttagtatatttcttttcaatttc----attctctaatattaaccatccaaattaacatgttgctgttatttggtatactagAAATATAGGTCTCATCGGAAACATTTGCTAGCTCGTGAGGCCGAAGCGGCTAATTGGACACGCAAAAGGCATATCTATGG-AGTAGACACCGGTGCTAATC
                       || || |||      |   |     ||     |||||||  | || |||  |  |||| | | |   || | || | |||||||||| || ||| |||||||||||||||| ||||| || ||||| || |  ||||  |  |  |||||  | | ||   || ||     | |  ||  
cataaattaaataattcaaaagaagcatttttgagggaagggttctaaatagaaaaatattacacttctaaagca-tatgtaggtttgtgtttgaatgc-agAAATATAGATCCCATAGGAAACATTTGCTAGCACGTGAAGCTGAAGCAGCAAGCTGGAGTCAAAGGAGGCAATTGTGTGCTGGTGGAGGGAAGAGAGAAG-
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86058102|gb|DR353859.1|DR353859
EST:     TTATGGGAGTCCATTGTCTCACTCGTCACAACGTTGCTAGTCACCTCCAA                         AA-TATAGGTCTCATCGGGAACATTTGCTAGCTCGTGAGGCCNAAGCGGCT
genomic: TTATGGGAGTCCATTGTCTCACTCGTCACAACGTTGCTAGTCACCTCCAAgttagtatat ... ggtatactagAAATATAGGTCTCATCGGAAACATTTGCTAGCTCGTGAGGCCGAAGCGGCT
EST: gi|124980772|gb|EL053699.1|EL053699
EST:     CCATTGTCTCACTCGTCACAACGTTGCTAGTCACCTCCAA                         AAATATAGGTCTCATCGGAAACATTTGCTAGCTCGTGAGGCCGAAGCGGCT
genomic: CCATTGTCTCACTCGTCACAACGTTGCTAGTCACCTCCAAgttagtatat ... ggtatactagAAATATAGGTCTCATCGGAAACATTTGCTAGCTCGTGAGGCCGAAGCGGCT
EST: gi|125199208|gb|EL214162.1|EL214162
EST:     CGTTGCTAGTCACCTCCAA                         AAATATAGGTCTCATCGGAAACATTTGCTAGCTCGTGAGGCCGAAGCGGCT
genomic: CGTTGCTAGTCACCTCCAAgttagtatat ... ggtatactagAAATATAGGTCTCATCGGAAACATTTGCTAGCTCGTGAGGCCGAAGCGGCT
EST: gi|125050867|gb|EL123136.1|EL123136
EST:     TTATGGGAGTCCATTGTCTCACTCGTCACAACGTTGCTAGTCACCTCCAA                         AAATATAGGTCTCATCGGAAACATTTGCTAG
genomic: TTATGGGAGTCCATTGTCTCACTCGTCACAACGTTGCTAGTCACCTCCAAgttagtatat ... ggtatactagAAATATAGGTCTCATCGGAAACATTTGCTAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cattctctaatattaaccatccaaattaacatgttgctgttatttggtatactagAAATATAGGTCTCATCGGAAACATTTGCTAGCTCGTGAGGCCGAAGCGGCTAATTGGACACGCAAAAGGCATATCTATGGAGTAGACACCGGTGCTAATC
     tctaatattaa  TA-rich tract