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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ttggtagctttagcacagctaatttgtagttttttcgagagttttctgttaagaggaaaagaagtatatgaaaatcttaatttctcctttgctttggcagTGGCATTGTAGCTACAGTATTTGGAGCCACAGGATTTCTGGGTCGTTATCTTGTGCAGCAGCTAG

Basic information

species Arabidopsis thaliana
transcript AT2G20360.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86048717|gb|DR344472.1|DR344472
EST:     GGCGTGGGACACCTCGCTCGCAAGGGTACTGGTGGGAGATCTTCCGTAAG                         TGGCATTGTAGCTACAGTATTTGGAGCCACAGGATTTCTGGGTCGTTATCT
genomic: GGCGTGGGACACCTCGCTCGCAAGGGTACTGGTGGGAGATCTTCCGTAAGgtatgccatt ... gctttggcagTGGCATTGTAGCTACAGTATTTGGAGCCACAGGATTTCTGGGTCGTTATCT
EST: gi|116387772|gb|EG430364.1|EG430364
EST:     GGCGTGGGACACCTCGCTCGCAAGGGTACTGGTGGGAGATCTTCCGTAAG                         TGGCATTGTAGCTACAGTATTTGGAGCCACAGGATTTCTGGGTCGTTATCT
genomic: GGCGTGGGACACCTCGCTCGCAAGGGTACTGGTGGGAGATCTTCCGTAAGgtatgccatt ... gctttggcagTGGCATTGTAGCTACAGTATTTGGAGCCACAGGATTTCTGGGTCGTTATCT
EST: gi|86048723|gb|DR344478.1|DR344478
EST:     GGCGTGGGACACCTCGCTCGCAAGGGTACTGGTGGGAGATCTTCCGTAAG                         TGGCATTGTAGCTACAGTATTTGGAGCCACAGGATTTCTGGGTCGTTATCT
genomic: GGCGTGGGACACCTCGCTCGCAAGGGTACTGGTGGGAGATCTTCCGTAAGgtatgccatt ... gctttggcagTGGCATTGTAGCTACAGTATTTGGAGCCACAGGATTTCTGGGTCGTTATCT
EST: gi|86048716|gb|DR344471.1|DR344471
EST:     GGCGTGGGACACCTCGCTCGCAAGGGTACTGGTGGGAGATCTTCCGTAAG                         TGGCATTGTAGCTACAGTATTTGGAGCCACAGGATTTCTGGGTCGTTATCT
genomic: GGCGTGGGACACCTCGCTCGCAAGGGTACTGGTGGGAGATCTTCCGTAAGgtatgccatt ... gctttggcagTGGCATTGTAGCTACAGTATTTGGAGCCACAGGATTTCTGGGTCGTTATCT
EST: gi|116377195|gb|EG419787.1|EG419787
EST:     GGCGTGGGACACCTCGCTCGCAAGGGTACTGGTGGGAGATCTTCCGTAAG                         TGGCATTGTAGCTACAGTATTTGGAGCCACAGGATTTCTGGGTCGTTATCT
genomic: GGCGTGGGACACCTCGCTCGCAAGGGTACTGGTGGGAGATCTTCCGTAAGgtatgccatt ... gctttggcagTGGCATTGTAGCTACAGTATTTGGAGCCACAGGATTTCTGGGTCGTTATCT
EST: gi|86048731|gb|DR344486.1|DR344486
EST:     GGCGTGGGACACCTCGCTCGCAAGGGTACTGGTGGGAGATCTTCCGTAAG                         TGGCATTGTAGCTACAGTATTTGGAGCCACAGGATTTCTGGGTCGTTATCT
genomic: GGCGTGGGACACCTCGCTCGCAAGGGTACTGGTGGGAGATCTTCCGTAAGgtatgccatt ... gctttggcagTGGCATTGTAGCTACAGTATTTGGAGCCACAGGATTTCTGGGTCGTTATCT
EST: gi|86048712|gb|DR344467.1|DR344467
EST:     GGCGTGGGACACCTCGCTCGCAAGGGTACTGGTGGGAGATCTTCCGTAAG                         TGGCATTGTAGCTACAGTATTTGGAGCCACAGGATTTCTGGGTCGTTATCT
genomic: GGCGTGGGACACCTCGCTCGCAAGGGTACTGGTGGGAGATCTTCCGTAAGgtatgccatt ... gctttggcagTGGCATTGTAGCTACAGTATTTGGAGCCACAGGATTTCTGGGTCGTTATCT
EST: gi|164023296|gb|ES179552.1|ES179552
EST:     GGCGTGGGACACCTCGCTCGCAAGGGTACTGGTGGGAGATCTTCCGTAAG                         TGGCATTGTAGCTACAGTAT
genomic: GGCGTGGGACACCTCGCTCGCAAGGGTACTGGTGGGAGATCTTCCGTAAGgtatgccatt ... gctttggcagTGGCATTGTAGCTACAGTAT
EST: gi|86048709|gb|DR344464.1|DR344464
EST:     GGCGTGGGACACCTCGCTCGCAAGGGTACTGGTGGGAGATCTTCCGTAAG                         TGGCATTGTAGCTACAGTATTTGGAGCCACAGGATTTCTGGGTCGTTATCT
genomic: GGCGTGGGACACCTCGCTCGCAAGGGTACTGGTGGGAGATCTTCCGTAAGgtatgccatt ... gctttggcagTGGCATTGTAGCTACAGTATTTGGAGCCACAGGATTTCTGGGTCGTTATCT
EST: gi|86048725|gb|DR344480.1|DR344480
EST:     GGCGTGGGACACCTCGCTCGCAAGGGTACTGGTGGGAGATCTTCCGTAAG                         TGGCATTGTAGCTACAGTATTTGGAGCCACAGGATTTCTGGGTCGTTATCT
genomic: GGCGTGGGACACCTCGCTCGCAAGGGTACTGGTGGGAGATCTTCCGTAAGgtatgccatt ... gctttggcagTGGCATTGTAGCTACAGTATTTGGAGCCACAGGATTTCTGGGTCGTTATCT
EST: gi|86048700|gb|DR344455.1|DR344455
EST:     GGCGTGGGACACCTCGCTCGCAAGGGTACTGGTGGGAGATCTTCCGTAAG                         TGGCATTGTAGCTACAGTATTTGGAGCCACAGGATTTCTGGGTCGTTATCT
genomic: GGCGTGGGACACCTCGCTCGCAAGGGTACTGGTGGGAGATCTTCCGTAAGgtatgccatt ... gctttggcagTGGCATTGTAGCTACAGTATTTGGAGCCACAGGATTTCTGGGTCGTTATCT
EST: gi|125092465|gb|EL150288.1|EL150288
EST:     GGCGTGGGACACCTCGCTCGCAAGGGTACTGGTGGGAGATCTTCCGTAAG                         TGGCATTGTAGCTACAGTATTTGGAGCCACAGGATTT
genomic: GGCGTGGGACACCTCGCTCGCAAGGGTACTGGTGGGAGATCTTCCGTAAGgtatgccatt ... gctttggcagTGGCATTGTAGCTACAGTATTTGGAGCCACAGGATTT
EST: gi|86048707|gb|DR344462.1|DR344462
EST:     GGCGTGGGACACCTCGCTCGCAAGGGTACTGGTGGGAGATCTTCCGTAAG                         TGGCATTGTAGCTACAGTATTTGGAGCCACAGGATTTCTGGGTCGTTATCT
genomic: GGCGTGGGACACCTCGCTCGCAAGGGTACTGGTGGGAGATCTTCCGTAAGgtatgccatt ... gctttggcagTGGCATTGTAGCTACAGTATTTGGAGCCACAGGATTTCTGGGTCGTTATCT
EST: gi|86048708|gb|DR344463.1|DR344463
EST:     GGCGTGGGACACCTCGCTCGCAAGGGTACTGGTGGGAGATCTTCCGTAAG                         TGGCATTGTAGCTACAGTATTTGGAGCCACAGGATTTCTGGGTCGTTATCT
genomic: GGCGTGGGACACCTCGCTCGCAAGGGTACTGGTGGGAGATCTTCCGTAAGgtatgccatt ... gctttggcagTGGCATTGTAGCTACAGTATTTGGAGCCACAGGATTTCTGGGTCGTTATCT
EST: gi|116377193|gb|EG419785.1|EG419785
EST:     GGCGTGGGACACCTCGCTCGCAAGGGTACTGGTGGGAGATCTTCCGTAAG                         TGGCATTGTAGCTACAGTATTTGGAGCCACAGGATTTCTGGGTCGTTATCT
genomic: GGCGTGGGACACCTCGCTCGCAAGGGTACTGGTGGGAGATCTTCCGTAAGgtatgccatt ... gctttggcagTGGCATTGTAGCTACAGTATTTGGAGCCACAGGATTTCTGGGTCGTTATCT
EST: gi|86048720|gb|DR344475.1|DR344475
EST:     GGCGTGGGACACCTCGCTCGCAAGGGTACTGGTGGGAGATCTTCCGTAAG                         TGGCATTGTAGCTACAGTATTTGGAGCCACAGGATTTCTGGGTCGTTATCT
genomic: GGCGTGGGACACCTCGCTCGCAAGGGTACTGGTGGGAGATCTTCCGTAAGgtatgccatt ... gctttggcagTGGCATTGTAGCTACAGTATTTGGAGCCACAGGATTTCTGGGTCGTTATCT
EST: gi|86048692|gb|DR344447.1|DR344447
EST:     GGCGTGGGACACCTCGCTCGCAAGGGTACTGGTGGGAGATCTTCCGTAAG                         TGGCATTGTAGCTACAGTATTTGGAGCCACAGGATTTCTGGGTCGTTATCT
genomic: GGCGTGGGACACCTCGCTCGCAAGGGTACTGGTGGGAGATCTTCCGTAAGgtatgccatt ... gctttggcagTGGCATTGTAGCTACAGTATTTGGAGCCACAGGATTTCTGGGTCGTTATCT
EST: gi|86048698|gb|DR344453.1|DR344453
EST:     GGCGTGGGACACCTCGCTCGCAAGGGTACTGGTGGGAGATCTTCCGTAAG                         TGGCATTGTAGCTACAGTATTTGGAGCCACAGGATTTCTGGGTCGTTATCT
genomic: GGCGTGGGACACCTCGCTCGCAAGGGTACTGGTGGGAGATCTTCCGTAAGgtatgccatt ... gctttggcagTGGCATTGTAGCTACAGTATTTGGAGCCACAGGATTTCTGGGTCGTTATCT
EST: gi|86048728|gb|DR344483.1|DR344483
EST:     GGCGTGGGACACCTCGCTCGCAAGGGTACTGGTGGGAGATCTTCCGTAAG                         TGGCATTGTAGCTACAGTATTTGGAGCCACAGGATTTCTGGGTCGTTATCT
genomic: GGCGTGGGACACCTCGCTCGCAAGGGTACTGGTGGGAGATCTTCCGTAAGgtatgccatt ... gctttggcagTGGCATTGTAGCTACAGTATTTGGAGCCACAGGATTTCTGGGTCGTTATCT
EST: gi|86048733|gb|DR344488.1|DR344488
EST:     GGCGTGGGACACCTCGCTCGCAAGGGTACTGGTGGGAGATCTTCCGTAAG                         TGGACATTGTAGCTACAGTATTTGGAGCCACAGGATTTCTGGGTCGTTATC
genomic: GGCGTGGGACACCTCGCTCGCAAGGGTACTGGTGGGAGATCTTCCGTAAGgtatgccatt ... gctttggcagTGG-CATTGTAGCTACAGTATTTGGAGCCACAGGATTTCTGGGTCGTTATC
EST: gi|86048697|gb|DR344452.1|DR344452
EST:     GGCGTGGGACACCTCGCTCGCAAGGGTACTGGTGGGAGATCTTCCGTAAG                         TGGCATTGTAGCTACAGTATTTGGAGCCACAGGATTTCTGGGTCGTTATCT
genomic: GGCGTGGGACACCTCGCTCGCAAGGGTACTGGTGGGAGATCTTCCGTAAGgtatgccatt ... gctttggcagTGGCATTGTAGCTACAGTATTTGGAGCCACAGGATTTCTGGGTCGTTATCT
EST: gi|86048727|gb|DR344482.1|DR344482
EST:     GGCGTGGGAC-MCTCGCTCGCAAGGGTACTGGTGGGAGATCTTCCGTAAG                         TGGCATTGTAGCTACAGTATTTGGAGCCACAGGATTTCTGGGTCGTTATCT
genomic: GGCGTGGGACACCTCGCTCGCAAGGGTACTGGTGGGAGATCTTCCGTAAGgtatgccatt ... gctttggcagTGGCATTGTAGCTACAGTATTTGGAGCCACAGGATTTCTGGGTCGTTATCT
EST: gi|86048701|gb|DR344456.1|DR344456
EST:     GGCGTGGGACACCTCGCTCGCAAGGGTACTGGTGGGAGATCTTCCGTAAG                         TGGCATTGTAGCTACAGTATTTGGAGCCACAGGATTTCTGGGTCGTTATCT
genomic: GGCGTGGGACACCTCGCTCGCAAGGGTACTGGTGGGAGATCTTCCGTAAGgtatgccatt ... gctttggcagTGGCATTGTAGCTACAGTATTTGGAGCCACAGGATTTCTGGGTCGTTATCT
EST: gi|86048729|gb|DR344484.1|DR344484
EST:     GGCGTGGGACACCTCGCTCGCAAGGGTACTGGTGGGAGATCTTCCGTAAG                         TGGCATTGTAGCTACAGTATTTGGAGCCACAGGATTTCTGGGTCGTTATCT
genomic: GGCGTGGGACACCTCGCTCGCAAGGGTACTGGTGGGAGATCTTCCGTAAGgtatgccatt ... gctttggcagTGGCATTGTAGCTACAGTATTTGGAGCCACAGGATTTCTGGGTCGTTATCT
EST: gi|86048718|gb|DR344473.1|DR344473
EST:     GGCGTGGGACACCTCGCTCGCAAGGGTACTGGTGGGAGATCTTCCGTAAG                         TGGCATTGTAGCTACAGTATTTGGAGCCACAGGATTTCTGGGTCGTTATCT
genomic: GGCGTGGGACACCTCGCTCGCAAGGGTACTGGTGGGAGATCTTCCGTAAGgtatgccatt ... gctttggcagTGGCATTGTAGCTACAGTATTTGGAGCCACAGGATTTCTGGGTCGTTATCT
EST: gi|86048726|gb|DR344481.1|DR344481
EST:     GGCGTGGGACACCTCGCTCGCAAGGGTACTGGTGGGAGATCTTCCGTAAG                         TGGCATTGTAGCTACAGTATTTGGAGCCACAGGATTTCTGGGTCGTTATCT
genomic: GGCGTGGGACACCTCGCTCGCAAGGGTACTGGTGGGAGATCTTCCGTAAGgtatgccatt ... gctttggcagTGGCATTGTAGCTACAGTATTTGGAGCCACAGGATTTCTGGGTCGTTATCT
EST: gi|86048710|gb|DR344465.1|DR344465
EST:     GGCGTGGGACACCTCGCTCGCAAGGGTACTGGTGGGAGATCTTCCGTAAG                         TGGCATTGTAGCTACAGTATTTGGAGCCACAGGATTTCTGGGTCGTTATCT
genomic: GGCGTGGGACACCTCGCTCGCAAGGGTACTGGTGGGAGATCTTCCGTAAGgtatgccatt ... gctttggcagTGGCATTGTAGCTACAGTATTTGGAGCCACAGGATTTCTGGGTCGTTATCT
EST: gi|86048706|gb|DR344461.1|DR344461
EST:     GGCGTGGGACACCTCGCTCGCAAGGGTACTGGTGGGAGATCTTCCGTAAG                         TGGCATTGTAGCTACAGTATTTGGAGCCACAGGATTTCTGGGTCGTTATCT
genomic: GGCGTGGGACACCTCGCTCGCAAGGGTACTGGTGGGAGATCTTCCGTAAGgtatgccatt ... gctttggcagTGGCATTGTAGCTACAGTATTTGGAGCCACAGGATTTCTGGGTCGTTATCT
EST: gi|86048734|gb|DR344489.1|DR344489
EST:     GGCGTGGGACACCTCGCTCGCAAGGGTACTGGTGGGAGATCTTCCGTAAG                         TGGCATTGTAGCTACAGTATTTGGAGCCACAGGATTTCTGGGTCGTTATCT
genomic: GGCGTGGGACACCTCGCTCGCAAGGGTACTGGTGGGAGATCTTCCGTAAGgtatgccatt ... gctttggcagTGGCATTGTAGCTACAGTATTTGGAGCCACAGGATTTCTGGGTCGTTATCT
EST: gi|86048691|gb|DR344446.1|DR344446
EST:     GGCGTGGGACANNNNGCTCGCAAGGGTACTGGTGGGAGATCTTCCGTAAG                         TGGCATTGTAGCTACAGTATTTGGAGCCACAGGATTTCTGGGTCGTTATCT
genomic: GGCGTGGGACACCTCGCTCGCAAGGGTACTGGTGGGAGATCTTCCGTAAGgtatgccatt ... gctttggcagTGGCATTGTAGCTACAGTATTTGGAGCCACAGGATTTCTGGGTCGTTATCT
EST: gi|86048688|gb|DR344443.1|DR344443
EST:     GGCGTGGGACACCTCGCTCGCAAGGGTACTGGTGGGAGATCTTCCGTAAG                         TGGCATTGTAGCTACAGTATTTGGAGCCACAGGATTTCTGGGTCGTTATCT
genomic: GGCGTGGGACACCTCGCTCGCAAGGGTACTGGTGGGAGATCTTCCGTAAGgtatgccatt ... gctttggcagTGGCATTGTAGCTACAGTATTTGGAGCCACAGGATTTCTGGGTCGTTATCT
EST: gi|86048695|gb|DR344450.1|DR344450
EST:     GCGTGGGACACCTCGCCTCGCAAGGGTACTGGTGGGAGATCTTCCGTAAG                         TGGCATTGTAGCTACAGTATTTGGAGCCACAGGATTTCTGGGTCGTTATCT
genomic: GCGTGGGACACCTCGC-TCGCAAGGGTACTGGTGGGAGATCTTCCGTAAGgtatgccatt ... gctttggcagTGGCATTGTAGCTACAGTATTTGGAGCCACAGGATTTCTGGGTCGTTATCT
EST: gi|86048737|gb|DR344492.1|DR344492
EST:     GGCGTGGGACACCTCGCTCGCAAGGGTACTGGTGGGAGATCTTCCGTAAG                         TGGCATTGTAGCTACAGTATTTGGAGCCACAGGATTTCTGGGTCGTTATCT
genomic: GGCGTGGGACACCTCGCTCGCAAGGGTACTGGTGGGAGATCTTCCGTAAGgtatgccatt ... gctttggcagTGGCATTGTAGCTACAGTATTTGGAGCCACAGGATTTCTGGGTCGTTATCT
EST: gi|86048705|gb|DR344460.1|DR344460
EST:     GGCGTGGGACACCTCGCTCGCAAGGGTACTGGTGGGAGATCTTCCGTAAG                         TGGCATTGTAGCTACAGTATTTGGAGCCACAGGATTTCTGGGTCGTTATCT
genomic: GGCGTGGGACACCTCGCTCGCAAGGGTACTGGTGGGAGATCTTCCGTAAGgtatgccatt ... gctttggcagTGGCATTGTAGCTACAGTATTTGGAGCCACAGGATTTCTGGGTCGTTATCT
EST: gi|86048721|gb|DR344476.1|DR344476
EST:     GGCGTGGGACACCTCGCTCGCAAGGGTACTGGTGGGAGATCTTCCGTAAG                         TGGCATTGTAGCTACAGTATTTGGAGCCACAGGATTTCTGGGTCGTTATCT
genomic: GGCGTGGGACACCTCGCTCGCAAGGGTACTGGTGGGAGATCTTCCGTAAGgtatgccatt ... gctttggcagTGGCATTGTAGCTACAGTATTTGGAGCCACAGGATTTCTGGGTCGTTATCT
EST: gi|86048719|gb|DR344474.1|DR344474
EST:     GGCGTGGGACACCTCGCTCGCAAGGGTACTGGNGGGAGATCTTCCGTAAG                         TGGCATTGTAGCTACAGTATTTGGAGCCACAGGATTTCNGGGTCGTTATCT
genomic: GGCGTGGGACACCTCGCTCGCAAGGGTACTGGTGGGAGATCTTCCGTAAGgtatgccatt ... gctttggcagTGGCATTGTAGCTACAGTATTTGGAGCCACAGGATTTCTGGGTCGTTATCT
EST: gi|116377190|gb|EG419782.1|EG419782
EST:     GGCGTGGGACACCTCGCTCGCAAGGGTACTGGTGGGAGATCTTCCGTAAG                         TGGCATTGTAGCTACAGTATTTGGAGCCACAGGATTTCTGGGTCGTTATCT
genomic: GGCGTGGGACACCTCGCTCGCAAGGGTACTGGTGGGAGATCTTCCGTAAGgtatgccatt ... gctttggcagTGGCATTGTAGCTACAGTATTTGGAGCCACAGGATTTCTGGGTCGTTATCT
EST: gi|116377199|gb|EG419791.1|EG419791
EST:     GGCGTGGGACACCTCGCTCGCAAGGGTACTGGTGGGAGATCTTCCGTAAG                         TGGCATTGTAGCTACAGTATTTGGAGCCACAGGATTTCTGGGTCGTTATCT
genomic: GGCGTGGGACACCTCGCTCGCAAGGGTACTGGTGGGAGATCTTCCGTAAGgtatgccatt ... gctttggcagTGGCATTGTAGCTACAGTATTTGGAGCCACAGGATTTCTGGGTCGTTATCT
EST: gi|86048703|gb|DR344458.1|DR344458
EST:     GGCGTGGGACACCTCGCTCGCAAGGGTACTGGTGGGAGATCTTCCGTAAG                         TGGCATTGTAGCTACAGTATTTGGAGCCACAGGATTTCTGGGTCGTTATCT
genomic: GGCGTGGGACACCTCGCTCGCAAGGGTACTGGTGGGAGATCTTCCGTAAGgtatgccatt ... gctttggcagTGGCATTGTAGCTACAGTATTTGGAGCCACAGGATTTCTGGGTCGTTATCT
EST: gi|116377200|gb|EG419792.1|EG419792
EST:     GGCGTGGGACACCTCGCTCGCAAGGGTACTGGTGGGAGATCTTCCGTAAG                         TGGCATTGTAGCTACAGTATTTGGAGCCACAGGATTTCTGGGTCGTTATCT
genomic: GGCGTGGGACACCTCGCTCGCAAGGGTACTGGTGGGAGATCTTCCGTAAGgtatgccatt ... gctttggcagTGGCATTGTAGCTACAGTATTTGGAGCCACAGGATTTCTGGGTCGTTATCT
EST: gi|86048724|gb|DR344479.1|DR344479
EST:     GGCGTGGGACACCTCGCTCGCAAGGGTACTGGTGGGAGATCTTCCGTAAG                         TGGCATTGTAGCTACAGTATTTGGAGCCACAGGATTTCTGGGTCGTTATCT
genomic: GGCGTGGGACACCTCGCTCGCAAGGGTACTGGTGGGAGATCTTCCGTAAGgtatgccatt ... gctttggcagTGGCATTGTAGCTACAGTATTTGGAGCCACAGGATTTCTGGGTCGTTATCT
EST: gi|86048704|gb|DR344459.1|DR344459
EST:     GGCGTGGGACACCTCGCTCGCAAGGGTACTGGTGGGAGATCTTCCGTAAG                         TGGCATTGTAGCTACAGTATTTGGAGCCACAGGATTTCTGGGTCGTTATCT
genomic: GGCGTGGGACACCTCGCTCGCAAGGGTACTGGTGGGAGATCTTCCGTAAGgtatgccatt ... gctttggcagTGGCATTGTAGCTACAGTATTTGGAGCCACAGGATTTCTGGGTCGTTATCT
EST: gi|86048722|gb|DR344477.1|DR344477
EST:     GGCGTGGGACACCTCGCTCGCAAGGGTACTGGTGGGAGATCTTCCGTAAG                         TGGCATTGTAGCTACAGTATTTGGAGCCACAGGATTTCTGGGTCGTTATCT
genomic: GGCGTGGGACACCTCGCTCGCAAGGGTACTGGTGGGAGATCTTCCGTAAGgtatgccatt ... gctttggcagTGGCATTGTAGCTACAGTATTTGGAGCCACAGGATTTCTGGGTCGTTATCT
EST: gi|86048738|gb|DR344493.1|DR344493
EST:     GGCGTGGGACACCTCGCTCGCAARGGTACTNGTGGGAGATCTTCCGTAAG                         TGGCATTGTAGCTACAGTATTTGGAGCCACARGATTTCTGGGTCGTTATCT
genomic: GGCGTGGGACACCTCGCTCGCAAGGGTACTGGTGGGAGATCTTCCGTAAGgtatgccatt ... gctttggcagTGGCATTGTAGCTACAGTATTTGGAGCCACAGGATTTCTGGGTCGTTATCT
EST: gi|116377196|gb|EG419788.1|EG419788
EST:     GGCGTGGGACACCTCGCTCGCAAGGGTACTGGTGGGAGATCTTCCGTAAG                         TGGCATTGTAGCTACAGTATTTGGAGCCACAGGATTTCTGGGTCGTTATCT
genomic: GGCGTGGGACACCTCGCTCGCAAGGGTACTGGTGGGAGATCTTCCGTAAGgtatgccatt ... gctttggcagTGGCATTGTAGCTACAGTATTTGGAGCCACAGGATTTCTGGGTCGTTATCT
EST: gi|116377187|gb|EG419779.1|EG419779
EST:     GGCGTGGGACACCTCGCTCGCAAGGGTACTGGTGGGAGATCTTCCGTAAG                         TGGCATTGTAGCTACAGTATTTGGAGCCACAGGATTTCTGGGTCGTTATCT
genomic: GGCGTGGGACACCTCGCTCGCAAGGGTACTGGTGGGAGATCTTCCGTAAGgtatgccatt ... gctttggcagTGGCATTGTAGCTACAGTATTTGGAGCCACAGGATTTCTGGGTCGTTATCT
EST: gi|86048693|gb|DR344448.1|DR344448
EST:     GGCGTGGGACACCTCGCTCGCAAGGGTACTGGTGGGAGATCTTCCGTAAG                         TGGCATTGTAGCTACAGTATTTGGAGCCACAGGATTTCTGGGTCGTTATCT
genomic: GGCGTGGGACACCTCGCTCGCAAGGGTACTGGTGGGAGATCTTCCGTAAGgtatgccatt ... gctttggcagTGGCATTGTAGCTACAGTATTTGGAGCCACAGGATTTCTGGGTCGTTATCT
EST: gi|86048732|gb|DR344487.1|DR344487
EST:     GGCGTGGGACACCTCGCTCGCAAGGGTACTGGTGGGAGATCTTCCGTAAG                         TGGCATTGTAGCTACAGTATTTGGAGCCACAGGATTTCTGGGTCGTTATCT
genomic: GGCGTGGGACACCTCGCTCGCAAGGGTACTGGTGGGAGATCTTCCGTAAGgtatgccatt ... gctttggcagTGGCATTGTAGCTACAGTATTTGGAGCCACAGGATTTCTGGGTCGTTATCT
EST: gi|86048730|gb|DR344485.1|DR344485
EST:     GGCGTGGGACACCTCGCTCGCAAGGGTACTGGTGGGAGATCTTCCGTAAG                         TGGCATTGTAGCTACAGTATTTGGAGCCACAGGATTTCTGGGTCGTTATCT
genomic: GGCGTGGGACACCTCGCTCGCAAGGGTACTGGTGGGAGATCTTCCGTAAGgtatgccatt ... gctttggcagTGGCATTGTAGCTACAGTATTTGGAGCCACAGGATTTCTGGGTCGTTATCT
EST: gi|86048711|gb|DR344466.1|DR344466
EST:     GGCGTGGGACACCTCGCTCGCAAGGGTACTGGTGGGAGATCTTCCGTAAG                         TGGCATTGTAGCTACAGTATTTGGAGCCACAGGATTTCTGGGTCGTTATCT
genomic: GGCGTGGGACACCTCGCTCGCAAGGGTACTGGTGGGAGATCTTCCGTAAGgtatgccatt ... gctttggcagTGGCATTGTAGCTACAGTATTTGGAGCCACAGGATTTCTGGGTCGTTATCT
EST: gi|86048690|gb|DR344445.1|DR344445
EST:     GGCGTGGGACACCTCGCTCGCAAGGGTACTGGTGGGAGATCTTCCGTAAG                         TGGCATTGTAGCTACAGTATTTGGAGCCACAGGATTTCTGGGTCGTTATCT
genomic: GGCGTGGGACACCTCGCTCGCAAGGGTACTGGTGGGAGATCTTCCGTAAGgtatgccatt ... gctttggcagTGGCATTGTAGCTACAGTATTTGGAGCCACAGGATTTCTGGGTCGTTATCT
EST: gi|86048735|gb|DR344490.1|DR344490
EST:     GGCGTGGGACACCTCGCTCGCAAGGGTACTGGTGGGAGATVTTCCGTAAG                         TGGCATTGTAGCTACAGTATTTGGAGCCACAGGATTTCTGGGTCGTTATCT
genomic: GGCGTGGGACACCTCGCTCGCAAGGGTACTGGTGGGAGATCTTCCGTAAGgtatgccatt ... gctttggcagTGGCATTGTAGCTACAGTATTTGGAGCCACAGGATTTCTGGGTCGTTATCT
EST: gi|86048713|gb|DR344468.1|DR344468
EST:     GGCGTGGGACACCTCGCTCGCAAGGGTACTGGTGGGAGATCTTCCGTAAG                         TGGCATTGTAGCTACAGTATTTGGAGCCACAGGATTTCTGGGTCGTTATCT
genomic: GGCGTGGGACACCTCGCTCGCAAGGGTACTGGTGGGAGATCTTCCGTAAGgtatgccatt ... gctttggcagTGGCATTGTAGCTACAGTATTTGGAGCCACAGGATTTCTGGGTCGTTATCT
EST: gi|86048696|gb|DR344451.1|DR344451
EST:     GGCGTGGGACACCTCGCTCGCAAGGGTACTGGTGGGAGATCTTCCGTAAG                         TGGCATTGTAGCTACAGTATTTGGAGCCACAGGATTTCTGGGTCGTTATCT
genomic: GGCGTGGGACACCTCGCTCGCAAGGGTACTGGTGGGAGATCTTCCGTAAGgtatgccatt ... gctttggcagTGGCATTGTAGCTACAGTATTTGGAGCCACAGGATTTCTGGGTCGTTATCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctgttaagaggaaaagaagtatatgaaaatcttaatttctcctttgctttggcagTGGCATTGTAGCTACAGTATTTGGAGCCACAGGATTTCTGGGTCGTTATCTTGTGCAGCAGCTAG
                             tcttaat  putative branch site (score: 3)
                             tcttaatttctccttt  CT-rich tract
           aaaagaagtatatgaa  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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ttggtagctttagcacagctaatttgtagttttttcgagagttttctgttaagaggaaaagaagtatatgaaaatcttaatttctcctttgctttggcagTGGCATTGTAGCTACAGTATTTGGAGCCACAGGATTTCTGGGTCGTTATCTTGTGCAGCAGCTAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaagaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -atgaaaa