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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtagtgtctttaccttaataatgtcttattttgattttacaatctgagttttgtcttctgaaatgtgtttgtgttccatttctatctctaagGAATCGTGAGGTTAAGAGAATTAAAAACAGCATAAAAGCGGGCAATAGCTTGGCGTTTCTTTATCAAGATATCAATGAACTTGAGCACTCTAGGCAGGTT

Basic information

species Arabidopsis thaliana
transcript AT2G19880.2
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G19880.1 (Arabidopsis thaliana), 3'ss of exon 2
lower sequence: Vv11s0016g03130.t01 (Vitis vinifera), 3'ss of exon 2
------------------------------------gtagtgtctttacc-ttaataatgtcttattttgattttacaatctgagttttgtcttctgaaatgtgtttgtgttccatttctatctctaagGAATCGTGAGGTTAAGAGAATTAAAAACAGCATAAAAGCGGGCAATAGCTTGGCGTTTCTTTATCAAGATATCAATGAACTTGAGCACTCTAGGCAGGTT
                                    |   |   | ||   || ||  | | ||||||||||   | || || | |||| |  | ||| || | ||    |    | |   || |  |||||||| ||| | ||| |||| ||  | |  || ||||  || |||||||| || |||||||| || ||||||||||| |||||||||||||  || | |
gtaccaagaattgatgaccagtatggaaatagcttggcttttagtctattattcatcctctgttattttgatac-agaaacttactttttttatttgagatatcttcaaatattttcttcttcccacagGAATCGAGAGATCAAGCGAATAAAGGATAATATGAAAGGTGGGAATAGCTTTGCATTTCTTTACCATGATATCAATGACCTTGAGCACTCTAATCAAGCT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tacaatctgagttttgtcttctgaaatgtgtttgtgttccatttctatctctaagGAATCGTGAGGTTAAGAGAATTAAAAACAGCATAAAAGCGGGCAATAGCTTGGCGTTTCTTTATCAAGATATCAATGAACTTGAGCACTCTAGGCAGGTT
                                    ttccatttctatctct  CT-rich tract
                                        atttctat  TA-rich tract