1 5' 3' | 2 5' 3' | 3 5' 3' |
...aaaatggtagtctgagttgagcagacacttcatactatgtattaggttttgttattgtcttgaattaggctaaagtttgaatcttttgatgtggtttcagGTCTTGCAAACAAAAAGACTGTGACCATCCAGGCCGCTGACAAGGACCAAGCTGTTGTGCTCGCCACCACCAAGACCAAGAAGCAGAACAAGCCTAAGCT
species | Arabidopsis thaliana |
transcript | AT2G19730.3 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CACTCTTACAAGCACTCTG GTCTTGCAAACAAAAAGACTGTGACCATCCAGGCCGCTGACAAGGACCAAGEST: gi|164042713|gb|ES002199.1|ES002199
genomic: CACTCTTACAAGCACTCTGgtaaatttgt ... gtggtttcagGTCTTGCAAACAAAAAGACTGTGACCATCCAGGCCGCTGACAAGGACCAAG
EST: CAGCAAGGAGACTAACAACCTCACCAACGTTCACTCTTACAAGCACTCTG GTCTTGCAA-CAAAAAGACTGTGACCATCCAGGCCGCTG-CAAGGACCEST: gi|164181652|gb|ES036916.1|ES036916
genomic: CAGCAAGGAGACTAACAACCTCACCAACGTTCACTCTTACAAGCACTCTGgtaaatttgt ... gtggtttcagGTCTTGCAAACAAAAAGACTGTGACCATCCAGGCCGCTGACAAGGACC
EST: CAGCAAGGAGACTAACAACCTCACCAACGTTCACTCTTACAAGCACTCTG GTTCTTGCAAACAAAAEST: gi|125097291|gb|EL153799.1|EL153799
genomic: CAGCAAGGAGACTAACAACCTCACCAACGTTCACTCTTACAAGCACTCTGgtaaatttgt ... gtggtttcagGT-CTTGCAAACAAAA
EST: CAGCAAGGAGACTAACAACTTCACCAACGTTCACTCTTACAAGCACTCTG GTCTTGCAAACAAAAAGACTGTGACCATCCAGGCCGEST: gi|86066023|gb|DR361780.1|DR361780
genomic: CAGCAAGGAGACTAACAACCTCACCAACGTTCACTCTTACAAGCACTCTGgtaaatttgt ... gtggtttcagGTCTTGCAAACAAAAAGACTGTGACCATCCAGGCCG
EST: CAGCAAGGAGACTAACAACCTCACCAACGTTCACTCTTACAAGCACTCTG GTCTTGCAAACAAAAAGACTGTGACCATCCAGGCCGCTGACAAGGACCAAGEST: gi|86066020|gb|DR361777.1|DR361777
genomic: CAGCAAGGAGACTAACAACCTCACCAACGTTCACTCTTACAAGCACTCTGgtaaatttgt ... gtggtttcagGTCTTGCAAACAAAAAGACTGTGACCATCCAGGCCGCTGACAAGGACCAAG
EST: CAGCAAGGAGACTAACAACCTCACCAACGTTCACTCTTACAAGCACTCTG GTCTTGCAAACAAAAAGACTGTGACCATCCAGGCCGCTGACAAGGACCAAGEST: gi|164158810|gb|ES085549.1|ES085549
genomic: CAGCAAGGAGACTAACAACCTCACCAACGTTCACTCTTACAAGCACTCTGgtaaatttgt ... gtggtttcagGTCTTGCAAACAAAAAGACTGTGACCATCCAGGCCGCTGACAAGGACCAAG
EST: GACTAACAACCTCACCAACGTTCACTCTTACAAGCACTCTG GTCTTGCAAACAAAAAAGACTGTGACCATCCAGGCCGCTGACAAGGACCAAEST: gi|86066015|gb|DR361772.1|DR361772
genomic: GACTAACAACCTCACCAACGTTCACTCTTACAAGCACTCTGgtaaatttgt ... gtggtttcagGTCTTGCAAACAAAAA-GACTGTGACCATCCAGGCCGCTGACAAGGACCAA
EST: CAGCAAGGAGACTAACAACCTCACCAACGTTCACTCTTACAAGCACTCTG GTCTTGCAAACAAAAAGACTGTGACCATCCAGGCCGCTGACAAGGACCAAGEST: gi|164137302|gb|ES125399.1|ES125399
genomic: CAGCAAGGAGACTAACAACCTCACCAACGTTCACTCTTACAAGCACTCTGgtaaatttgt ... gtggtttcagGTCTTGCAAACAAAAAGACTGTGACCATCCAGGCCGCTGACAAGGACCAAG
EST: CAGCAAGGAGACTAACAACCTCACCAACGTTCACTCTTACAAGCACTCTG GTCTTGCAAACAAAAAGACTGTGACCATCCAGGCCGCTGACAAEST: gi|86066017|gb|DR361774.1|DR361774
genomic: CAGCAAGGAGACTAACAACCTCACCAACGTTCACTCTTACAAGCACTCTGgtaaatttgt ... gtggtttcagGTCTTGCAAACAAAAAGACTGTGACCATCCAGGCCGCTGACAA
EST: CAGCAAGGAGACTAACAACCTCACCAACGTTCACTCTTACAAGCACTCTG GTCTTGCAAACAAAAAGACTGTGACCATCCAGGCCGCTGACAAGGACCAAGEST: gi|86066001|gb|DR361758.1|DR361758
genomic: CAGCAAGGAGACTAACAACCTCACCAACGTTCACTCTTACAAGCACTCTGgtaaatttgt ... gtggtttcagGTCTTGCAAACAAAAAGACTGTGACCATCCAGGCCGCTGACAAGGACCAAG
EST: CAGCAAGGAGACTAACAACCTCACCAACGTTCACTCTTACAAGCACTCTG GTCTTGCAAACAAAAAWGACTGTGACCATCCAGGCCGCTGACAAGGACCAAEST: gi|86079143|gb|DR374900.1|DR374900
genomic: CAGCAAGGAGACTAACAACCTCACCAACGTTCACTCTTACAAGCACTCTGgtaaatttgt ... gtggtttcagGTCTTGCAAACAAAAA-GACTGTGACCATCCAGGCCGCTGACAAGGACCAA
EST: CAACCTCACCAACGTTCACTCTTMCAAGCACTCTG GTCTTGCAAACAWAAAGACTGTGACCATCCAGGCCGCTGACAAGGACCAAGEST: gi|164010394|gb|ES056080.1|ES056080
genomic: CAACCTCACCAACGTTCACTCTTACAAGCACTCTGgtaaatttgt ... gtggtttcagGTCTTGCAAACAAAAAGACTGTGACCATCCAGGCCGCTGACAAGGACCAAG
EST: AGCAAGGAGACTAACAACCTCACCAACGTTCACTCTTACAAGCACTCTAG GTCTTGCAAACAAAA-GACTGTGACCATCEST: gi|86066019|gb|DR361776.1|DR361776
genomic: AGCAAGGAGACTAACAACCTCACCAACGTTCACTCTTACAAGCACTCT-Ggtaaatttgt ... gtggtttcagGTCTTGCAAACAAAAAGACTGTGACCATC
EST: CAGCAAGGAGACTAACAACCTCACCAACGTTCACTCTTACAAGCACTCTG GTCTTGCAAACAAAAAGACTGTGACCATCCAGGCCGCTGACAAGGACCAAGEST: gi|164179018|gb|ES042089.1|ES042089
genomic: CAGCAAGGAGACTAACAACCTCACCAACGTTCACTCTTACAAGCACTCTGgtaaatttgt ... gtggtttcagGTCTTGCAAACAAAAAGACTGTGACCATCCAGGCCGCTGACAAGGACCAAG
EST: CAGCAAGGAGACTAACAACCTCACCAACGTTCACTCTTACAAGCACTCTG GTCTTGCAAACAAAAEST: gi|164114901|gb|ES209376.1|ES209376
genomic: CAGCAAGGAGACTAACAACCTCACCAACGTTCACTCTTACAAGCACTCTGgtaaatttgt ... gtggtttcagGTCTTGCAAACAAAA
EST: CAAGGAGACTAACAACCTCACCAACGTTCACTCTTACAAGCACTCTG GTCTTGCAAACAAAAAGACTGTGACCATCCAGGCCGCTGACAAGGACCAAGEST: gi|116452423|gb|EG495015.1|EG495015
genomic: CAAGGAGACTAACAACCTCACCAACGTTCACTCTTACAAGCACTCTGgtaaatttgt ... gtggtttcagGTCTTGCAAACAAAAAGACTGTGACCATCCAGGCCGCTGACAAGGACCAAG
EST: CAGCAAGGAGACTAACAACCTCACCAACGTTCACTCTTACAAGCACTCTG GTCTTGCAAACAAAAAGACTGTGACCATCCAGGCCGCTGACAAGGACCAAGEST: gi|86066018|gb|DR361775.1|DR361775
genomic: CAGCAAGGAGACTAACAACCTCACCAACGTTCACTCTTACAAGCACTCTGgtaaatttgt ... gtggtttcagGTCTTGCAAACAAAAAGACTGTGACCATCCAGGCCGCTGACAAGGACCAAG
EST: CAGCAAGGAGACTAACAACCTCACCAACGTTCACTCTTACAAGCACTCTG GTCTTGCAAACAAAAAGACTGTGACCATCCAGGCCGCTGACAAGGACCAAGEST: gi|47830640|gb|CK120324.1|CK120324
genomic: CAGCAAGGAGACTAACAACCTCACCAACGTTCACTCTTACAAGCACTCTGgtaaatttgt ... gtggtttcagGTCTTGCAAACAAAAAGACTGTGACCATCCAGGCCGCTGACAAGGACCAAG
EST: CAGCAAGGAGACTAACAACCTCACCAACGTTCACTCTTACAAGCACTCTG GTCTTGCAAACAAAAAGACTGTGACCATCCAGGCCGCTGACAAGGACCAAGEST: gi|86066025|gb|DR361782.1|DR361782
genomic: CAGCAAGGAGACTAACAACCTCACCAACGTTCACTCTTACAAGCACTCTGgtaaatttgt ... gtggtttcagGTCTTGCAAACAAAAAGACTGTGACCATCCAGGCCGCTGACAAGGACCAAG
EST: CAGCAAGGAGACTAACAACCTCACCAACGTTCACTCTTACAAGCACTCTG GTCTTGCAAACAAAAAGACTGTGACCATCCAGGCCGCTGACAAGGACCAAGEST: gi|86066021|gb|DR361778.1|DR361778
genomic: CAGCAAGGAGACTAACAACCTCACCAACGTTCACTCTTACAAGCACTCTGgtaaatttgt ... gtggtttcagGTCTTGCAAACAAAAAGACTGTGACCATCCAGGCCGCTGACAAGGACCAAG
EST: CAGCAAGGAGACTAACAACCTCACCAACGTTCACTCTTACAAGCACTCTG GTCTTGCAAACAAAAAGACTGTGACCATCCAGGCCGCTGACAAGGACCAAG
genomic: CAGCAAGGAGACTAACAACCTCACCAACGTTCACTCTTACAAGCACTCTGgtaaatttgt ... gtggtttcagGTCTTGCAAACAAAAAGACTGTGACCATCCAGGCCGCTGACAAGGACCAAG
gttttgttattgtcttgaattaggctaaagtttgaatcttttgatgtggtttcagGTCTTGCAAACAAAAAGACTGTGACCATCCAGGCCGCTGACAAGGACCAAGCTGTTGTGCTCGCCACCACCAAGACCAAGAAGCAGAACAAGCCTAAGCT
ttgaatta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aaaatggtagtctgagttgagcagacacttcatactatgtattaggttttgttattgtcttgaattaggctaaagtttgaatcttttgatgtggtttcagGTCTTGCAAACAAAAAGACTGTGACCATCCAGGCCGCTGACAAGGACCAAGCTGTTGTGCTCGCCACCACCAAGACCAAGAAGCAGAACAAGCCTAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - -cagacac
- - - - - - - - - - - - - - - - - - - - - - ggttttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -agtttga