Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagttattaggttttctaaatattatcctagcttgtggagtagtttgattgctcgaatcactgtgatacttgtttgataacaattggttttgatttgaagGATTCGTATTTTGGATTGTTACACTGATCCATTGGGATGGATTGATCAATCTTCAACTAGTTTTAGTGAAGGTTCAAGTTTGATTAAGTTACATAAGTGT

Basic information

species Arabidopsis thaliana
transcript AT2G18410.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86053445|gb|DR349202.1|DR349202
EST:     TTGCAATTGTTGAAGCAAAAAGGAATCGTTGTCTCTTCATCTTCTAAATG                         GATTCGTATTTTGGATTGTTACACTGATCCATTGGGATGGATTGATCAATC
genomic: TTGCAATTGTTGAAGCAAAAAGGAATCGTTGTCTCTTCATCTTCTAAATGgtgagttatt ... tgatttgaagGATTCGTATTTTGGATTGTTACACTGATCCATTGGGATGGATTGATCAATC
EST: gi|86053448|gb|DR349205.1|DR349205
EST:     TTGCAATTGTTGAAGCAAAAAGGAATCGTTGTCTCTTCATCTTCTAAATG                         GATTCGTATTTTGGATTGTTACACTGATCCATTGGGATGGATTGATCAATC
genomic: TTGCAATTGTTGAAGCAAAAAGGAATCGTTGTCTCTTCATCTTCTAAATGgtgagttatt ... tgatttgaagGATTCGTATTTTGGATTGTTACACTGATCCATTGGGATGGATTGATCAATC
EST: gi|19876059|gb|AU236890.1|AU236890
EST:     TTGCAATTGTTGAAGCAAAAAGGAATCGTTGTCTCTTCATCTTCTAAATG                         GATTCGTATTTTGGATTGTTACACTGATCCATTGGGATGGATTGATCAATC
genomic: TTGCAATTGTTGAAGCAAAAAGGAATCGTTGTCTCTTCATCTTCTAAATGgtgagttatt ... tgatttgaagGATTCGTATTTTGGATTGTTACACTGATCCATTGGGATGGATTGATCAATC
EST: gi|86053447|gb|DR349204.1|DR349204
EST:     TTGCAATTGTTGAAGCAAAAAGGAATCGTTGTCTCTTCATCTTCTAAATG                         GATTCGTATTTTGGATTGTTACACTGATCCATTGGGATGGATTGATCAATC
genomic: TTGCAATTGTTGAAGCAAAAAGGAATCGTTGTCTCTTCATCTTCTAAATGgtgagttatt ... tgatttgaagGATTCGTATTTTGGATTGTTACACTGATCCATTGGGATGGATTGATCAATC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgattgctcgaatcactgtgatacttgtttgataacaattggttttgatttgaagGATTCGTATTTTGGATTGTTACACTGATCCATTGGGATGGATTGATCAATCTTCAACTAGTTTTAGTGAAGGTTCAAGTTTGATTAAGTTACATAAGTGT
                               ataacaatt  TA-rich tract