Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgattctattttcatgagaaagttttcatctttctttttttgtggttaatgaattttggcttgttttgattttgaaagTTAGTGGTTTTGTACGTTGACTTTAAGCTTGATGAGAGCTATACACCAAGTAAAATCTCTATTCGAGCTGGTGATGGTTTTCATAACTTAAAG

Basic information

species Arabidopsis thaliana
transcript AT2G18290.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116467243|gb|EG509835.1|EG509835
EST:     TACAACCACATTTGATTAACATTCAATTCCAGAAGAAAGTGAAACTGCAG                         TTAGTGGTTTTGTACGTTGACTTTAAGCTTGATGAGAGCTATACACCAAGT
genomic: TACAACCACATTTGATTAACATTCAATTCCAGAAGAAAGTGAAACTGCAGgtatgattct ... attttgaaagTTAGTGGTTTTGTACGTTGACTTTAAGCTTGATGAGAGCTATACACCAAGT
EST: gi|86079120|gb|DR374877.1|DR374877
EST:     TACAACCACATTTGATTAACATTCAATTCCAGAAGAAAGTGAAACTGCAG                         TTAGTGGTTTTGTACGTTGACTTTAAGCTTGATGAGAGCTATACACCAAGT
genomic: TACAACCACATTTGATTAACATTCAATTCCAGAAGAAAGTGAAACTGCAGgtatgattct ... attttgaaagTTAGTGGTTTTGTACGTTGACTTTAAGCTTGATGAGAGCTATACACCAAGT
EST: gi|19877766|gb|AU238597.1|AU238597
EST:     TACAACCACATTTGATTAACATTCAATTCCAGAAGAAAGTGAAACTGCAG                         TTAGTGGTTTTGTACGTTGACTTTAAGCTTGATGAGAGCTATACACCAAGT
genomic: TACAACCACATTTGATTAACATTCAATTCCAGAAGAAAGTGAAACTGCAGgtatgattct ... attttgaaagTTAGTGGTTTTGTACGTTGACTTTAAGCTTGATGAGAGCTATACACCAAGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttcatctttctttttttgtggttaatgaattttggcttgttttgattttgaaagTTAGTGGTTTTGTACGTTGACTTTAAGCTTGATGAGAGCTATACACCAAGTAAAATCTCTATTCGAGCTGGTGATGGTTTTCATAACTTAAAG
                                        ttttgat  putative branch site (score: 4)
                                        ttttgattttgaaa  TA-rich tract