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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttagaatctgttttctaagggctgtctcaattatctatcttgttttgaaacaatagtagtaaccattactttcttctgtctctctatgtatgtatgtttatagGTACCAAGCTTCAAAGGATGATATCACTGTGTTTACAGCTCTTTCAAAGCCCCCAACTTCAGAGTTTGTCAATGTATCTCGTTGGTTCAACCACATCGAT

Basic information

species Arabidopsis thaliana
transcript AT2G18110.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G18110.1 (Arabidopsis thaliana), 3'ss of exon 2
lower sequence: GLYMA09G07350.1 (Glycine max), 3'ss of exon 1
gttagaatctgttttctaagggctgtctcaattatctatcttgttttgaaacaatagtagtaaccattactttcttctgtctctctatgtatgtatgtttatagGTACCAAGCTTCAAAGGATGATATCACTGTGTTTACAGCTCTTTCAAAGCCCCCAACTTCAGAGTTTGTCAATGTATCTCGTTGGTTCAACCACATCGAT
                       |||| | |   ||| | || ||||  ||   | ||        ||  | | |  |||||| || || |||| | ||| ||||||||||||||||||||||||| |||||||  || ||||  |  |||   | ||| |    || | |                                 
------------------gtatatgtcactagcttcttttttttttttgaattcttgt--------ttcttatgtattgtctccctttgcatgtgtttttttagGTACCAAGCTTCAAAGGATGATCTCACTGTTATT-CAGCATTGCCAACTGCTCCATCACATGAATAT---------------------------------

upper sequence: AT2G18110.1 (Arabidopsis thaliana), 3'ss of exon 2
lower sequence: Vv17s0000g01540.t01 (Vitis vinifera), 3'ss of exon 2
------gttagaatctgttttct----aagggctg--------tctcaattatctatcttgttttgaaacaatag-----tagtaaccattactttcttctgtctctctatgt-atgtatgtttatagGTACCAAGCTTCAAAGGATGATATCACTGTGTTTACAGCTCTTTCAAAGCCCCCAACTTCAGAGTTTGTCAATGTATCTCGTTGGTTCAACCACATCGAT
       || | ||||| |||||    || || |         |||||   ||   | |||   |||||  ||       || | |  | ||| |  |    | |   ||  | ||  || ||   ||||||||||||||||||||||||||||||||   | |||||||||||||| | ||| | || || |  || ||||| ||| | |||| ||||||||| || 
gtaagttttggtatctgatttctttacaatggatactttgatctctcagacatgggtattgaagtgaaaacatgaaaagataatgattaatacatattatgattttgttaaatcattaattttctcagGTACCAAGCTTCAAAGGATGATATCACTGTTCATGCAGCTCTTTCAAAGGCTCCATCATCTGAATACGTGAATGTCTCTAGGTGGTACAACCACATAGAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aacaatagtagtaaccattactttcttctgtctctctatgtatgtatgtttatagGTACCAAGCTTCAAAGGATGATATCACTGTGTTTACAGCTCTTTCAAAGCCCCCAACTTCAGAGTTTGTCAATGTATCTCGTTGGTTCAACCACATCGAT
        tagtaac  putative branch site (score: 1)
                                        tatgtatgtttata  TA-rich tract