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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtctacaatatacttaactcgacttcatgcggctatctttaggtaatcatgatcattgaaactgttgattcctgttttgatagATAAGGTCTGTGACGCTGTTGAAGTAGCTGGGAGGAATGTAATGTCAACCTCTTCCACTGTTACAACCGAACTCGTTGATCACAA

Basic information

species Arabidopsis thaliana
transcript AT2G17840.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G17840.1 (Arabidopsis thaliana), 3'ss of exon 2
lower sequence: Vv04s0023g03670.t01 (Vitis vinifera), 3'ss of exon 2
gtaagtctaca-atatacttaactcgacttc---atgcggctatctttaggtaatcatgatcat-tgaaactgttgattcctgttttg-----------atagATAAGGTCTGTGACGCTGTTGAAGTAGCTGGGAGGAATGTAATGTCAACCTCTTCCACTGTTACAACCGAACTCGTTGATCACAA
     | | || || |   |  |||  ||||   |||| | |   |||   | ||  |  |  | || |  | ||  ||  | ||||            |||| |||||||||||| || ||||||||||| || |||||||| |||||||| || |||||||| || || | ||| ||    || | 
---gctttccacatgtgtatggctctgcttcctaatgcagtttattttgttttattttatttttgtgtatttttttcttttttttttacctctcgtgaaatagGTAAGGTCTGTGATGCGGTTGAAGTAGCCGGAAGGAATGTTATGTCAACATCATCCACTGTGACCACTGGACTTGTGTCACATAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gcggctatctttaggtaatcatgatcattgaaactgttgattcctgttttgatagATAAGGTCTGTGACGCTGTTGAAGTAGCTGGGAGGAATGTAATGTCAACCTCTTCCACTGTTACAACCGAACTCGTTGATCACAA
                                  tgttgat  putative branch site (score: 4)
                                        ttcctgtttt  CT-rich tract
     tatcttta  TA-rich tract