1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtgagcaacattacttgctctgttttttaagtagctatgaagtttggaatgtggtgattagtgtttcttttgtgaattttttgtgtagATTGATGTCATTGTTAGTCTTCTAAGCGGGAGACTTGTACGAGAGCGCATTGGTCCTGCAATGCTAAGTGCAGTGCAAAGTCAA
species | Arabidopsis thaliana |
transcript | AT2G17730.2 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TGGATCTCTGGAAATCCGATGAGTCGGGTTTCGGATGTTTTCTCTACTTG ATTGATGTCATTGTTAGTCTTCTAAGCGGGAGACTTGTACGAGAGCGCATTEST: gi|86056626|gb|DR352383.1|DR352383
genomic: TGGATCTCTGGAAATCCGATGAGTCGGGTTTCGGATGTTTTCTCTACTTGgtgagcaaca ... ttttgtgtagATTGATGTCATTGTTAGTCTTCTAAGCGGGAGACTTGTACGAGAGCGCATT
EST: TGGATCTCTGGAAATCCGATGAGTCGGGTTTCGGATGTTTTCTCTACTTG ATTGATGTCATTGTTAGTCTTCTAAGCGGGAGACTTGTACGAGAGCGCATTEST: gi|86056631|gb|DR352388.1|DR352388
genomic: TGGATCTCTGGAAATCCGATGAGTCGGGTTTCGGATGTTTTCTCTACTTGgtgagcaaca ... ttttgtgtagATTGATGTCATTGTTAGTCTTCTAAGCGGGAGACTTGTACGAGAGCGCATT
EST: TGGATCTCTGGAAATCCGATGAGTCGGGTTTCGGATGTTTTCTCTACTTG ATTGATGTCATTGTTAGTCTTCTAAGCGGGAGACTTGTACGAGAGCGCATTEST: gi|86056625|gb|DR352382.1|DR352382
genomic: TGGATCTCTGGAAATCCGATGAGTCGGGTTTCGGATGTTTTCTCTACTTGgtgagcaaca ... ttttgtgtagATTGATGTCATTGTTAGTCTTCTAAGCGGGAGACTTGTACGAGAGCGCATT
EST: TGGATCTCTGGAAATCCGATGAGTCGGGTTTCGGATGTTTTCTCTACTTG ATTGATGTCATTGTTAGTCTTCTAAGCGGGAGACTTGTACGAGAGCGCATTEST: gi|86056624|gb|DR352381.1|DR352381
genomic: TGGATCTCTGGAAATCCGATGAGTCGGGTTTCGGATGTTTTCTCTACTTGgtgagcaaca ... ttttgtgtagATTGATGTCATTGTTAGTCTTCTAAGCGGGAGACTTGTACGAGAGCGCATT
EST: TGGATCTCTGGAAATCCGATGAGTCGGGTTTCGGATGTTTTCTCTACTTG ATTGATGTCATTGTTAGTCTTCTAAGCGGGAGACTTGTACGAGAGCGCATTEST: gi|86056632|gb|DR352389.1|DR352389
genomic: TGGATCTCTGGAAATCCGATGAGTCGGGTTTCGGATGTTTTCTCTACTTGgtgagcaaca ... ttttgtgtagATTGATGTCATTGTTAGTCTTCTAAGCGGGAGACTTGTACGAGAGCGCATT
EST: TGGATCTCTGGAAATCCGATGAGTCGGGTTTCGGATGTTTTCTCTACTTG ATTGATGTCATTGTTAGTCTTCTAAGCGGGAGACTTGTACGAGAGCGCATTEST: gi|124970265|gb|EL044106.1|EL044106
genomic: TGGATCTCTGGAAATCCGATGAGTCGGGTTTCGGATGTTTTCTCTACTTGgtgagcaaca ... ttttgtgtagATTGATGTCATTGTTAGTCTTCTAAGCGGGAGACTTGTACGAGAGCGCATT
EST: TCGGGTTTCGGATGTTTTCTCTACTTG ATTGATGTCATTGTTAGTCTTCTAAGCGGGAGACTTGTACGAGAGCGCATTEST: gi|125306399|gb|EL320484.1|EL320484
genomic: TCGGGTTTCGGATGTTTTCTCTACTTGgtgagcaaca ... ttttgtgtagATTGATGTCATTGTTAGTCTTCTAAGCGGGAGACTTGTACGAGAGCGCATT
EST: TGTTTTCTCTACTTG ATTGATGTCATTGTTAGTCTTCTAAGCGGGAGACTTGTACGAGAGCGCATTEST: gi|86056627|gb|DR352384.1|DR352384
genomic: TGTTTTCTCTACTTGgtgagcaaca ... ttttgtgtagATTGATGTCATTGTTAGTCTTCTAAGCGGGAGACTTGTACGAGAGCGCATT
EST: TGGATCTCTGGAAATCCGATGAGTCGGGTTTCGGATGTTTTCTCTACTTG ATTGATGTCATTGTTAGTCTTCTAAGCGGGAGACTTGTACGAGAGCGCATTEST: gi|86056622|gb|DR352379.1|DR352379
genomic: TGGATCTCTGGAAATCCGATGAGTCGGGTTTCGGATGTTTTCTCTACTTGgtgagcaaca ... ttttgtgtagATTGATGTCATTGTTAGTCTTCTAAGCGGGAGACTTGTACGAGAGCGCATT
EST: TGGATCTCTGGAAATCCGATGAGTCGGGTTTCGGATGTTTTCTCTACTTG ATTGATGTCATTGTTAGTCTTCTAAGCGGGAGACTTGTACGAGAGCGCATTEST: gi|86056630|gb|DR352387.1|DR352387
genomic: TGGATCTCTGGAAATCCGATGAGTCGGGTTTCGGATGTTTTCTCTACTTGgtgagcaaca ... ttttgtgtagATTGATGTCATTGTTAGTCTTCTAAGCGGGAGACTTGTACGAGAGCGCATT
EST: TGGATCTCTGGAAATCCGATGAGTCGGGTTTCGGATGTTTTCTCTACTTG ATTGATGTCATTGTTAGTCTTCTAAGCGGGAGACTTGTACGAGAGCGCATT
genomic: TGGATCTCTGGAAATCCGATGAGTCGGGTTTCGGATGTTTTCTCTACTTGgtgagcaaca ... ttttgtgtagATTGATGTCATTGTTAGTCTTCTAAGCGGGAGACTTGTACGAGAGCGCATT
gctatgaagtttggaatgtggtgattagtgtttcttttgtgaattttttgtgtagATTGATGTCATTGTTAGTCTTCTAAGCGGGAGACTTGTACGAGAGCGCATTGGTCCTGCAATGCTAAGTGCAGTGCAAAGTCAA
ttttttgt CT-rich tract
ttttgtgaatttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagcaacattacttgctctgttttttaagtagctatgaagtttggaatgtggtgattagtgtttcttttgtgaattttttgtgtagATTGATGTCATTGTTAGTCTTCTAAGCGGGAGACTTGTACGAGAGCGCATTGGTCCTGCAATGCTAAGTGCAGTGCAAAGTCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG