Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|86061786|gb|DR357543.1|DR357543EST: TCTGGTAGAGAGAGTTATGAGAAGGGCAAAAAAGCTCTCCAGAATTGGAA GCATTTTGGTATGGATTGGGCATTTGTTGATCCTGCAACACCTGTTGAAAC
genomic: TCTGGTAGAGAGAGTTATGAGAAGGGCAAAAAAGCTCTCCAGAATTGGAAgtatgttttg ... ctaattgcagGCATTTTGGTATGGATTGGGCATTTGTTGATCCTGCAACACCTGTTGAAAC
EST:
gi|86086361|gb|DR382120.1|DR382120EST: TCTGGTAGAGAGAGTTATGAGAAGGGCAAAAAAGCTCTCCAGAATTGGAA GCATTTTGGTATGGATTGGGCATTTGTTGATCCTGCAACACCTGTTGAAAC
genomic: TCTGGTAGAGAGAGTTATGAGAAGGGCAAAAAAGCTCTCCAGAATTGGAAgtatgttttg ... ctaattgcagGCATTTTGGTATGGATTGGGCATTTGTTGATCCTGCAACACCTGTTGAAAC
EST:
gi|86077284|gb|DR373041.1|DR373041EST: TCTGGTAGAGAGAGTTATGAGAAGGGCAAAAAAGCTCTCCAGAATTGGAA GCATTTTGGTATGGATTGGGCATTTGTTGATCCTGCAACACCTGTTGAAAC
genomic: TCTGGTAGAGAGAGTTATGAGAAGGGCAAAAAAGCTCTCCAGAATTGGAAgtatgttttg ... ctaattgcagGCATTTTGGTATGGATTGGGCATTTGTTGATCCTGCAACACCTGTTGAAAC
EST:
gi|19878362|gb|AU239193.1|AU239193EST: TCTGGTAGAGAGAGTTATGAGAAGGGCAAAAAAGCTCTCCAGAATTGGAA GCATTTTGGTATGGATTGGGCATTTGTTGATCCTGCAACACCTGTTGAAAC
genomic: TCTGGTAGAGAGAGTTATGAGAAGGGCAAAAAAGCTCTCCAGAATTGGAAgtatgttttg ... ctaattgcagGCATTTTGGTATGGATTGGGCATTTGTTGATCCTGCAACACCTGTTGAAAC
EST:
gi|86061618|gb|DR357375.1|DR357375EST: TCTGGTAGAGAGAGTTATGAGAAGGGCAAAAAAGCTCTCCAGAATTGGAA GCATTTTGGTATGGATTGGGCATTTGTTGATCCTGCAACACCTGTTGAAAC
genomic: TCTGGTAGAGAGAGTTATGAGAAGGGCAAAAAAGCTCTCCAGAATTGGAAgtatgttttg ... ctaattgcagGCATTTTGGTATGGATTGGGCATTTGTTGATCCTGCAACACCTGTTGAAAC
EST:
gi|86061787|gb|DR357544.1|DR357544EST: TCTGGTAGAGAGAGTTATGAGAAGGGCAAAAAAGCTCTCCAGAATTGGAA GCATTTTGGTATGGATTGGGCATTTGTTGATCCTGCAACACCTGTTG
genomic: TCTGGTAGAGAGAGTTATGAGAAGGGCAAAAAAGCTCTCCAGAATTGGAAgtatgttttg ... ctaattgcagGCATTTTGGTATGGATTGGGCATTTGTTGATCCTGCAACACCTGTTG
EST:
gi|86084935|gb|DR380694.1|DR380694EST: TCTGGTAGAGAGAGTTATGAGAAGGGCAAAAAAGCTCTCCAGAATTGGAA GCATTTTGGTATGGATTGGGCATTTGTTGATCCTGCAACACCTGTTGAAAC
genomic: TCTGGTAGAGAGAGTTATGAGAAGGGCAAAAAAGCTCTCCAGAATTGGAAgtatgttttg ... ctaattgcagGCATTTTGGTATGGATTGGGCATTTGTTGATCCTGCAACACCTGTTGAAAC
EST:
gi|86061788|gb|DR357545.1|DR357545EST: TCTGGTAGAGAGAGTTATGAGAAGGGCAAAAAAGCTCTCCAGAATTGGAA GCATTTTGGTATGGATTGGGCATTTGTTGA
genomic: TCTGGTAGAGAGAGTTATGAGAAGGGCAAAAAAGCTCTCCAGAATTGGAAgtatgttttg ... ctaattgcagGCATTTTGGTATGGATTGGGCATTTGTTGA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.atctcaaatcaatggaacatcaatcggttctgttctcattgatttctaattgcagGCATTTTGGTATGGATTGGGCATTTGTTGATCCTGCAACACCTGTTGAAACCGGTAAGAAGTTTTGCATTTGCGTGAAAGAAGTTCTTCCATGGGTGATG
ttctaat putative branch site (score: 2)
tttct CT-rich tract
attgatttctaatt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtatgttttgctttttatcatctcaaatcaatggaacatcaatcggttctgttctcattgatttctaattgcagGCATTTTGGTATGGATTGGGCATTTGTTGATCCTGCAACACCTGTTGAAACCGGTAAGAAGTTTTGCATTTGCGTGAAAGAAGTTCTTCCATGGGTGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT