1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...ttttggtggtggcaagaattggtttgattacattttgatagatgtttttgattcttctctatgtggttactggttgtgatgttatctgtcttctactcagTGAACCACCAACAGAGCCAAATACGAAACTTGTTGTTGATCGTGATGGGAAGGTGTTTTTAAAGCAGCAACCGAAAGAAACACCATACTGGTCCTTTTCA
species | Arabidopsis thaliana |
transcript | AT2G17520.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CCGATCGTTACATCTAGTCCCGGCCGCAGATCAATTTTGCAGATTCGTCG TGAACCACCAACAGAGCCAAATACGAAACTTGTTGTTGATCGTGATGGGAAEST: gi|125015955|gb|EL088224.1|EL088224
genomic: CCGATCGTTCCATCTAGTCCCGGCCGCAGATCAATTTTGCAGATTCGTCGgtgagtttct ... ttctactcagTGAACCACCAACAGAGCCAAATACGAAACTTGTTGTTGATCGTGATGGGAA
EST: CCGATCGTTTCATCTAGTCCCGGCCGCAGATCAATTTTGCAGATTCGTCG TGAACCACCAACA
genomic: CCGATCGTTCCATCTAGTCCCGGCCGCAGATCAATTTTGCAGATTCGTCGgtgagtttct ... ttctactcagTGAACCACCAACA
ttttgattcttctctatgtggttactggttgtgatgttatctgtcttctactcagTGAACCACCAACAGAGCCAAATACGAAACTTGTTGTTGATCGTGATGGGAAGGTGTTTTTAAAGCAGCAACCGAAAGAAACACCATACTGGTCCTTTTCA
ttttgat putative branch site (score: 4)
tctgtcttctactc putative PPT
atgttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttttggtggtggcaagaattggtttgattacattttgatagatgtttttgattcttctctatgtggttactggttgtgatgttatctgtcttctactcagTGAACCACCAACAGAGCCAAATACGAAACTTGTTGTTGATCGTGATGGGAAGGTGTTTTTAAAGCAGCAACCGAAAGAAACACCATACTGGTCCTTTTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - caagaat
- - - - - - - - - - ggtttga