1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtatatatgttaatctcgattttagttttagaatcgatttggttgttgtttcttcgagtaatatagagaaattgttttcaacagATGAGAAAAACGATACCAAGGAAGAGAGTAAGAGTACTACTAAACCAGAATCAGGCTCAGGAGCTCCACCTTCACCTTCACCGACTGATCCTGGGCTTGA
species | Arabidopsis thaliana |
transcript | AT2G17390.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TAATTTTCCGATGGCTTCAAGCTCAGAGAAAACACCTCTTATTCCTTCAG ATGAGAAAAACGATACCAAGGAAGAGAGTAAGAGTACTACTAAACCAGAATEST: gi|125019546|gb|EL091815.1|EL091815
genomic: TAATTTTCCGATGGCTTCAAGCTCAGAGAAAACACCTCTTATTCCTTCAGgtatatatgt ... ttttcaacagATGAGAAAAACGATACCAAGGAAGAGAGTAAGAGTACTACTAAACCAGAAT
EST: TAATTTTCCGATGGCTTCAAGCTCAGAGAAAACACCTCTTATTCCTTCAG ATGAGAAAAACGATACCAAGGAAGAGAGTAAGAGTACTACTAAACCAGAATEST: gi|86055530|gb|DR351287.1|DR351287
genomic: TAATTTTCCGATGGCTTCAAGCTCAGAGAAAACACCTCTTATTCCTTCAGgtatatatgt ... ttttcaacagATGAGAAAAACGATACCAAGGAAGAGAGTAAGAGTACTACTAAACCAGAAT
EST: TAATTTTCCGATGGCTTCAAGCTCAGAGAAAACACCTCTTATTCCTTCAG ATGAGAAAAACGATACCAAGGAAGAGAGTAAGAGTACTACTAAACCAGAATEST: gi|86055524|gb|DR351281.1|DR351281
genomic: TAATTTTCCGATGGCTTCAAGCTCAGAGAAAACACCTCTTATTCCTTCAGgtatatatgt ... ttttcaacagATGAGAAAAACGATACCAAGGAAGAGAGTAAGAGTACTACTAAACCAGAAT
EST: TAATTTTCCGATGGCTTCAAGCTCAGAGAAAACACCTCTTATTCCTTCAG ATGAGAAAAACGATACCAAGGAAGAGAGTAAGAGTACTACTAAACCAGAATEST: gi|116476826|gb|EG519418.1|EG519418
genomic: TAATTTTCCGATGGCTTCAAGCTCAGAGAAAACACCTCTTATTCCTTCAGgtatatatgt ... ttttcaacagATGAGAAAAACGATACCAAGGAAGAGAGTAAGAGTACTACTAAACCAGAAT
EST: TAATTTTCCGATGGCTTCAAGCTCAGAGAAAACACCTCTTATTCCTTCAG ATGAGAAAAACGATACCAAGGAAGAGAGTAAGAGTACTACTAAACCAGAATEST: gi|86055526|gb|DR351283.1|DR351283
genomic: TAATTTTCCGATGGCTTCAAGCTCAGAGAAAACACCTCTTATTCCTTCAGgtatatatgt ... ttttcaacagATGAGAAAAACGATACCAAGGAAGAGAGTAAGAGTACTACTAAACCAGAAT
EST: TAATTTTCCGATGGCTTCAAGCTCAGAGAAAACACCTCTTATTCCTTCAG ATGAGAAAAACGATACCAAGGAAGAGAGTAAGAGTACTACTAAACCAGAATEST: gi|125298925|gb|EL313010.1|EL313010
genomic: TAATTTTCCGATGGCTTCAAGCTCAGAGAAAACACCTCTTATTCCTTCAGgtatatatgt ... ttttcaacagATGAGAAAAACGATACCAAGGAAGAGAGTAAGAGTACTACTAAACCAGAAT
EST: TAATTTTCCGATGGCTTCAAGCTCAGAGAAAACACCTCTTATTCCTTCAG ATGAGAAAAACGATACCAAGGAAGAGAGTAAGAGTACTACTAAACCAGAATEST: gi|86055536|gb|DR351293.1|DR351293
genomic: TAATTTTCCGATGGCTTCAAGCTCAGAGAAAACACCTCTTATTCCTTCAGgtatatatgt ... ttttcaacagATGAGAAAAACGATACCAAGGAAGAGAGTAAGAGTACTACTAAACCAGAAT
EST: TAATTTTCCGATGGCTTCAAGCTCAGAGAAAACACCTCTTATTCCTTCAG ATGAGAAAAACGATACCAAGGAAGAGAGTAAGAGTACTACTAAACCAGAATEST: gi|86055528|gb|DR351285.1|DR351285
genomic: TAATTTTCCGATGGCTTCAAGCTCAGAGAAAACACCTCTTATTCCTTCAGgtatatatgt ... ttttcaacagATGAGAAAAACGATACCAAGGAAGAGAGTAAGAGTACTACTAAACCAGAAT
EST: TAATTTTCCGATGGCTTCAAGCTCAGAGAAAACACCTCTTATTCCTTCAG ATGAGAAAAACGATACCAAGGAAGAGAGTAAGAGTACTACTAAACCAGAATEST: gi|86055533|gb|DR351290.1|DR351290
genomic: TAATTTTCCGATGGCTTCAAGCTCAGAGAAAACACCTCTTATTCCTTCAGgtatatatgt ... ttttcaacagATGAGAAAAACGATACCAAGGAAGAGAGTAAGAGTACTACTAAACCAGAAT
EST: TAATTTTCCGATGGCTTCAAGCTCAGAGAAAACACCTCTTATTCCTTCAG ATGAGAAAAACGATACCAAGGAAGAGAGTAAGAGTACTACTAAACCAGAATEST: gi|86055525|gb|DR351282.1|DR351282
genomic: TAATTTTCCGATGGCTTCAAGCTCAGAGAAAACACCTCTTATTCCTTCAGgtatatatgt ... ttttcaacagATGAGAAAAACGATACCAAGGAAGAGAGTAAGAGTACTACTAAACCAGAAT
EST: TAATTTTCCGATGGCTTCAAGCTCAGAGAAAACACCTCTTATTCCTTCAG ATGAGAAAAKACGATACCAAGGAAGAGAGTAAGAGGTACTACTAAACCAGAEST: gi|86055527|gb|DR351284.1|DR351284
genomic: TAATTTTCCGATGGCTTCAAGCTCAGAGAAAACACCTCTTATTCCTTCAGgtatatatgt ... ttttcaacagATGAGAAAA-ACGATACCAAGGAAGAGAGTAAGAG-TACTACTAAACCAGA
EST: TAATTTTCCGATGGCTTCAAGCTCAGAGAAAACACCTCTTATTCCTTCAG ATGAGAAAAACGATACCAAGGAAGAAAGTAAGAGTACTACTACTAAACCAGEST: gi|86055532|gb|DR351289.1|DR351289
genomic: TAATTTTCCGATGGCTTCAAGCTCAGAGAAAACACCTCTTATTCCTTCAGgtatatatgt ... ttttcaacagATGAGAAAAACGATACCAAGGAAGAGAGTAAGAG---TACTACTAAACCAG
EST: TAATTTKCSGATGGCTTCAAGCTCAGAGAAAACACCTCTTATTCCTTCAG ATGAGAAAAACGATACCAAGGAAGAGAGTAAGAGTACTACTAAACCAGAATEST: gi|86055534|gb|DR351291.1|DR351291
genomic: TAATTTTCCGATGGCTTCAAGCTCAGAGAAAACACCTCTTATTCCTTCAGgtatatatgt ... ttttcaacagATGAGAAAAACGATACCAAGGAAGAGAGTAAGAGTACTACTAAACCAGAAT
EST: TAATTTTCCGATGGCTTCAAGCTCAGAGAAAACACCTCTTATTCCTTCAG ATGAGAAAAACGATACCAAGGAAGAGAGTAAGAGTACTACTAAACCAGAATEST: gi|86055523|gb|DR351280.1|DR351280
genomic: TAATTTTCCGATGGCTTCAAGCTCAGAGAAAACACCTCTTATTCCTTCAGgtatatatgt ... ttttcaacagATGAGAAAAACGATACCAAGGAAGAGAGTAAGAGTACTACTAAACCAGAAT
EST: TAATTTTCCGATGGCTTCAAGCTCAGAGAAAACACCTCTTATTCCTTCAG ATGAGAAAAACGATACCAAGGAAGAGAGTAAGAGTACTACTAAACCAGAATEST: gi|116419184|gb|EG461776.1|EG461776
genomic: TAATTTTCCGATGGCTTCAAGCTCAGAGAAAACACCTCTTATTCCTTCAGgtatatatgt ... ttttcaacagATGAGAAAAACGATACCAAGGAAGAGAGTAAGAGTACTACTAAACCAGAAT
EST: TAATTTTCCGATGGCTTCAAGCTCAGAGAAAACACCTCTTATTCCTTCAG ATGAGAAAAACGATACCAAGGAAGAGAGTAAGAGTACTACTAAACCAGAATEST: gi|86055535|gb|DR351292.1|DR351292
genomic: TAATTTTCCGATGGCTTCAAGCTCAGAGAAAACACCTCTTATTCCTTCAGgtatatatgt ... ttttcaacagATGAGAAAAACGATACCAAGGAAGAGAGTAAGAGTACTACTAAACCAGAAT
EST: TAATTTTCCGATGGCTTCAAGCTCAGAGAAAACACCTCTTATTCCTTCAG ATGAGAAAAACGATACCAAGGAAGAGAGTAAGAGTACTACTAAACCAGAAT
genomic: TAATTTTCCGATGGCTTCAAGCTCAGAGAAAACACCTCTTATTCCTTCAGgtatatatgt ... ttttcaacagATGAGAAAAACGATACCAAGGAAGAGAGTAAGAGTACTACTAAACCAGAAT
agaatcgatttggttgttgtttcttcgagtaatatagagaaattgttttcaacagATGAGAAAAACGATACCAAGGAAGAGAGTAAGAGTACTACTAAACCAGAATCAGGCTCAGGAGCTCCACCTTCACCTTCACCGACTGATCCTGGGCTTGA
ttgttttc CT-rich tract
taatatagagaaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatatatgttaatctcgattttagttttagaatcgatttggttgttgtttcttcgagtaatatagagaaattgttttcaacagATGAGAAAAACGATACCAAGGAAGAGAGTAAGAGTACTACTAAACCAGAATCAGGCTCAGGAGCTCCACCTTCACCTTCACCGACTGATCCTGGGCTTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT