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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtactacttcttgttcatagaaaatgttgattcttatgattatgtatatatgtcactaaagtattgattctgcttaattagGTAAATGCTTTCAGAGAGAGAAGAGCACTTGCCTTAACACTCAATGACACCAAAACAGCAGTGAACAAACTCCATCACATGATTAGTTTTCTCACTGCCA

Basic information

species Arabidopsis thaliana
transcript AT2G17000.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G17000.1 (Arabidopsis thaliana), 3'ss of exon 2
lower sequence: Vv03s0038g03030.t01 (Vitis vinifera), 3'ss of exon 5
-------gtactacttcttgttcatagaaaatgttgattcttatg-attatgtatatatgtcactaaagtattgattctgcttaa------------ttagGTAAATGCTTTCAGAGAGAGAAGAGCACTTGCCTTAACACTCAATGACACCAAAACAGCAGTGAACAAACTCCATCACATGATTAGTTTTCTCACTGCCA
         |    | | ||   || |||  ||  |||||| |   |       ||| | | |||     ||||||  ||  |||            | |||| |||||||||||||| || |||||||||||||| ||| | |||||||| |||||||| || |||||||| ||||| ||| | | | || |   |  ||
ccacaccccatggatgcatgaatat-gaatttgcagattctaacacacagcacctatcttttactcgctgattgataatgtgtaagtcttggttgtttcagGTTAATGCTTTCAGAGAAAGGAGAGCACTTGCCTTGACATTGAATGACACAAAAACAGCCGTTAACAAACTTCATCAAATGGTGAATGTTGTAGTTTTCA

upper sequence: AT2G17000.1 (Arabidopsis thaliana), 3'ss of exon 2
lower sequence: Vv03s0038g02980.t01 (Vitis vinifera), 3'ss of exon 3
gtactacttcttg--ttcata-----gaaaatgttgattcttatgatta-tgtatatatgtcactaaagtattgattctgcttaa------------ttagGTAAATGCTTTCAGAGAGAGAAGAGCACTTGCCTTAACACTCAATGACACCAAAACAGCAGTGAACAAACTCCATCACATGATTAGTTTTCTCACTGCCA
     || || ||  | ||||     |||  ||  |||||| |     |     ||| | | |||     ||||||  ||  |||            | |||| |||||||||||||| ||  |||||||||| || ||| | |||||||| |||||||| || |||||||| ||||| ||| | | | || |   || ||
-ccacacctcatggatgcataaatatgaatttgcagattctaacacgcagcacctattttttactcgctgattgataatgtgtaagccttggctgtttcagGTTAATGCTTTCAGAGAAAGGCGAGCACTTGCTTTGACATTGAATGACACAAAAACAGCCGTTAACAAACTTCATCAAATGGTGAATGTTGTAGTTGTCA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgattcttatgattatgtatatatgtcactaaagtattgattctgcttaattagGTAAATGCTTTCAGAGAGAGAAGAGCACTTGCCTTAACACTCAATGACACCAAAACAGCAGTGAACAAACTCCATCACATGATTAGTTTTCTCACTGCCA
                                         ttctgctt  CT-rich tract
       ttatgattatgtatat  TA-rich tract